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  5. Als_g27148

Als_g27148 (SURF1)


Aliases : SURF1

Description : assembly factor (SURF1) of cytochrome c oxidase assembly & original description: none


Gene families : OG0007236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g27148
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AT3G17910 SURF1 Surfeit locus 1 cytochrome c oxidase biogenesis protein 0.02 OrthoFinder output from all 47 species
Nbi_g14207 SURF1 assembly factor (SURF1) of cytochrome c oxidase assembly... 0.03 OrthoFinder output from all 47 species
Solyc03g118610.4.1 SURF1, Solyc03g118610 component SURF1 of cytochrome c oxidase assembly 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002994 Surf1/Shy1 42 340
No external refs found!