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  5. Als_g27005

Als_g27005 (HAP1, MEE63, MAGO)


Aliases : HAP1, MEE63, MAGO

Description : component *(Magoh) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003958 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g27005

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00130180 HAP1, MEE63,... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31937.t1 HAP1, MEE63,... component *(Magoh) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.21 HAP1, MEE63, MAGO RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Cre09.g392692 HAP1, MEE63, MAGO RNA processing.RNA quality control Exon Junction complex... 0.06 OrthoFinder output from all 47 species
GSVIVT01013876001 HAP1, MEE63, MAGO RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
LOC_Os08g01660.1 HAP1, MEE63,... component Magoh of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g18880.1 HAP1, MEE63,... component Magoh of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Mp5g13520.1 HAP1, MEE63, MAGO component Magoh of RNA quality control Exon Junction complex 0.08 OrthoFinder output from all 47 species
Pp3c1_16440V3.1 HAP1, MEE63,... mago nashi family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_21720V3.1 HAP1, MEE63,... mago nashi family protein 0.02 OrthoFinder output from all 47 species
Ppi_g12567 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017567 HAP1, MEE63, MAGO component *(Magoh) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008380 RNA splicing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR004023 Mago_nashi 39 180
No external refs found!