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Aliases : SNL4
Description : component *(SNL) of histone deacetylase machineries & original description: none
Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00090p00182010 | SNL4,... | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G24190 | SNL3, ATSIN3, SIN3 | SIN3-like 3 | 0.05 | OrthoFinder output from all 47 species | |
| AT5G15020 | SNL2 | SIN3-like 2 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g066433 | SNL4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17667 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g21578 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011658 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.31G072300.1 | SNL4, Ceric.31G072300 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g18942 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g10036 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01020136001 | SNL3, ATSIN3, SIN3 | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01032579001 | SNL2 | Chromatin organisation.histone modifications.histone... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_35988 | SNL4 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03517 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| MA_18241g0010 | SNL4 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g02880.1 | SNL4 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Mp7g11300.1 | SNL5 | Paired amphipathic helix protein Sin3-like 2... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g39361 | SNL6 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g09115 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14557 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g087360.4.1 | SNL2, Solyc02g087360 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18268 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e017111_P002 | SNL4, Zm00001e017111 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013194 | HDAC_interact_dom | 22 | 114 |
| No external refs found! |