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  5. Als_g21641

Als_g21641


Description : not classified & original description: none


Gene families : OG0001797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g21641
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00088750 evm_27.TU.AmTr_v1... Protein TSS OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G01320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G15290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G28080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g071573 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g077986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g15019 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g08477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0031.g024493 No alias not classified & original description: CDS=852-6302 0.02 OrthoFinder output from all 47 species
Cba_g16051 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G017100.1 Ceric.12G017100 not classified & original description: pacid=50600997... 0.05 OrthoFinder output from all 47 species
Dac_g23136 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g31539 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g34188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01023693001 No alias Protein TSS OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01023694001 No alias Protein TSS OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_14168 No alias Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
LOC_Os04g55230.1 LOC_Os04g55230 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
LOC_Os07g23990.1 LOC_Os07g23990 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.06 OrthoFinder output from all 47 species
Lfl_g03522 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10433171g0010 No alias Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
MA_10436966g0010 No alias Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath : 111.0) 0.03 OrthoFinder output from all 47 species
Msp_g42756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15877 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g56916 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo10032 No alias Protein TSS OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Smo442478 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Solyc01g095900.4.1 Solyc01g095900 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.02 OrthoFinder output from all 47 species
Solyc06g068230.4.1 Solyc06g068230 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.02 OrthoFinder output from all 47 species
Solyc07g006030.4.1 Solyc07g006030 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species
Spa_g02169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033372_P001 Zm00001e033372 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.02 OrthoFinder output from all 47 species
Zm00001e041774_P003 Zm00001e041774 Protein TSS OS=Arabidopsis thaliana (sp|f4jkh6|tss_arath... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR033646 CLU-central 795 933
IPR028275 CLU_N 48 118
No external refs found!