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  5. Als_g19020

Als_g19020 (EMB33, SUS2, EMB177, EMB14)


Aliases : EMB33, SUS2, EMB177, EMB14

Description : not classified & original description: none


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g19020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.03 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Ceric.07G006500.1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Dcu_g02064 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
GSVIVT01017346001 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os05g07050.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Lfl_g02476 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Mp1g12380.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Pir_g09836 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc07g008880.3.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Zm00001e030094_P003 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017070 U6 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR019580 Prp8_U6-snRNA-bd 86 204
No external refs found!