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  5. Als_g17795

Als_g17795


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g17795

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 OrthoFinder output from all 47 species
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 OrthoFinder output from all 47 species
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 OrthoFinder output from all 47 species
Aop_g02046 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000501 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0091.g042854 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.10G002500.1 Ceric.10G002500 component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Dcu_g18005 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g03190 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01030295001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01032756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os01g25610.1 LOC_Os01g25610 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g01560.1 LOC_Os02g01560 component RPS4 of SSU proteome 0.06 OrthoFinder output from all 47 species
Len_g50156 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
MA_127596g0010 No alias component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.05 OrthoFinder output from all 47 species
Nbi_g03427 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g12385 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_3690V3.1 Pp3c11_3690 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c1_8290V3.1 Pp3c1_8290 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c25_3736V3.1 Pp3c25_3736 Ribosomal protein S4 (RPS4A) family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_23800V3.1 Pp3c7_23800 Ribosomal protein S4 (RPS4A) family protein 0.01 OrthoFinder output from all 47 species
Sam_g13009 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27349 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g38267 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc02g070330.4.1 Solyc02g070330 component RPS4 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc02g070340.3.1 Solyc02g070340 component RPS4 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g05578 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g05579 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g17898 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Spa_g23890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02542 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006307_P001 Zm00001e006307 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e011676_P001 Zm00001e011676 component RPS4 of SSU proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR032277 40S_S4_C 212 256
IPR013843 Ribosomal_S4e_N 3 39
IPR005824 KOW 178 211
IPR002942 S4_RNA-bd 44 90
No external refs found!