1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g17485

Als_g17485 (EMB2771)


Aliases : EMB2771

Description : component *(APC1) of (APC/C)-dependent ubiquitination platform subcomplex & original description: none


Gene families : OG0006432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006432_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g17485

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00148280 EMB2771,... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.02 OrthoFinder output from all 47 species
AT5G05560 EMB2771 E3 ubiquitin ligase, putative 0.07 OrthoFinder output from all 47 species
Adi_g061131 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species
Aev_g15018 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
Azfi_s0130.g049023 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species
Cba_g14327 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Ceric.30G071400.1 EMB2771, Ceric.30G071400 component *(APC1) of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
Cre13.g579100 EMB2771 Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g12987 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
Ehy_g05112 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species
GSVIVT01032797001 EMB2771 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.06 OrthoFinder output from all 47 species
Gb_37425 EMB2771 component APC1 of (APC/C)-dependent ubiquitination... 0.04 OrthoFinder output from all 47 species
Len_g11449 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
MA_10428431g0010 EMB2771 Anaphase-promoting complex subunit 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_138164g0010 EMB2771 Anaphase-promoting complex subunit 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g13981 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.06 OrthoFinder output from all 47 species
Pir_g58795 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.07 OrthoFinder output from all 47 species
Ppi_g10085 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.04 OrthoFinder output from all 47 species
Zm00001e031482_P002 EMB2771, Zm00001e031482 component APC1 of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005680 anaphase-promoting complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041221 APC1_C 1589 1768
IPR024990 Apc1 107 250
IPR046794 Apc1_MidN 713 775
IPR046794 Apc1_MidN 512 625
No external refs found!