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  5. Pnu_g11959

Pnu_g11959 (AtHPR1, AtTHO1, THO1, HPR1)


Aliases : AtHPR1, AtTHO1, THO1, HPR1

Description : component *(THOC1/HPR1) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0016417 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0016417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11959
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Adi_g077797 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.01 OrthoFinder output from all 39 species
Smo96989 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 115 522
No external refs found!