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  5. Als_g16173

Als_g16173


Description : scaffold nucleoporin of nuclear pore complex *(NUP188) & original description: none


Gene families : OG0006216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g16173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00195800 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AT4G38760 No alias Protein of unknown function (DUF3414) 0.04 OrthoFinder output from all 47 species
Adi_g055512 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.07 OrthoFinder output from all 47 species
Aev_g43300 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Ala_g14349 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.05 OrthoFinder output from all 47 species
Cba_g13637 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Dde_g13684 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.06 OrthoFinder output from all 47 species
GSVIVT01024075001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
LOC_Os10g06610.1 LOC_Os10g06610 NUP188 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Len_g14722 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Lfl_g12598 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.05 OrthoFinder output from all 47 species
Msp_g15694 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.05 OrthoFinder output from all 47 species
Pir_g19559 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.05 OrthoFinder output from all 47 species
Pnu_g07543 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
Ppi_g48554 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
Sam_g18039 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Solyc11g039880.2.1 Solyc11g039880 NUP188 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Zm00001e002662_P001 Zm00001e002662 NUP188 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018864 Nucleoporin_Nup188_N 46 965
No external refs found!