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  5. Als_g15978

Als_g15978


Description : SBP-type transcription factor & original description: none


Gene families : OG0001309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g15978

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00076020 SPL1,... RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
AT1G76580 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 OrthoFinder output from all 47 species
Ceric.10G052200.1 SPL12, Ceric.10G052200 SBP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g10513 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g61760.1 SPL1, LOC_Os03g61760 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
LOC_Os08g40260.1 LOC_Os08g40260 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Len_g39002 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50902 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09606 SPL12 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g053240.4.1 SPL1, Solyc05g053240 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
Spa_g49449 No alias SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 195 268
No external refs found!