Als_g14847 (CHR5)

Aliases : CHR5

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g14847
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Ala_g22712	CHR11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g28495	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g12795	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06161	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08885	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0754.g085337	No alias	not classified & original description: CDS=1-1965	0.03	OrthoFinder output from all 47 species
Cba_g12790	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g42061	CHR5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g15984	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
GSVIVT01018979001	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
LOC_Os01g27040.1	CHR17, LOC_Os01g27040	chromatin remodeling factor (Iswi)	0.03	OrthoFinder output from all 47 species
Len_g27757	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_104034g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species
Msp_g27750	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g44223	CHR11	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g04407	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g12699	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15409	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18943	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc02g085390.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.03	OrthoFinder output from all 47 species
Spa_g51134	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08903	CHR01, CHR1,...	chromaTin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g37141	CHR17	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	766	876
IPR000330	SNF2_N	455	727
IPR023780	Chromo_domain	367	415

External Links

No external refs found!

Als_g14847 (CHR5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation