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  5. Als_g13220

Als_g13220 (CRF3)


Aliases : CRF3

Description : subgroup ERF-VI transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g13220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00184450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00185480 ERF-1, ATERF-1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00044590 DREB2A, DREB2,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00180260 ATERF3, ERF3,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00058p00066390 RAP2.11,... External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00132820 RAP2.11,... External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00141890 CRF3,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00102760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AT1G77200 No alias Integrase-type DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G16280 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57600 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60490 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G11140 CRF1 cytokinin response factor 1 0.02 OrthoFinder output from all 47 species
AT4G13620 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G23750 TMO3, CRF2 cytokinin response factor 2 0.02 OrthoFinder output from all 47 species
AT4G31060 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G13910 LEP Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G25810 tny Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G44210 ATERF-9, ERF9, ATERF9 erf domain protein 9 0.02 OrthoFinder output from all 47 species
Aev_g18681 tny subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g09376 HRE2 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22400 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g00529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05033 CRF3 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01979 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Aob_g19242 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00507 WIN1, SHN1 subgroup ERF-V transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05459 No alias subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13135 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.06 OrthoFinder output from all 47 species
Aop_g38301 HRE2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38416 tny subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00525.t1 Aspi01Gene00525 subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03857.t1 Aspi01Gene03857 subgroup ERF-I transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05658.t1 Aspi01Gene05658 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene05659.t1 Aspi01Gene05659 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene17041.t1 Aspi01Gene17041 subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28739.t1 Aspi01Gene28739 subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37405.t1 Aspi01Gene37405 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41136.t1 CRF3, Aspi01Gene41136 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63655.t1 HRE2, Aspi01Gene63655 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Azfi_s0050.g031139 tny subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035884 No alias subgroup ERF-V transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037615 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0119.g046680 No alias subgroup ERF-IX transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g03083 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g13066 No alias subgroup ERF-VI transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.05G076100.1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G046500.1 Ceric.11G046500 subgroup ERF-V transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.12G060100.1 DREB26, Ceric.12G060100 not classified & original description: pacid=50601268... 0.03 OrthoFinder output from all 47 species
Ceric.13G053900.1 Ceric.13G053900 subgroup ERF-IX transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.13G080300.1 Ceric.13G080300 subgroup ERF-V transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.15G043800.1 HRE2, Ceric.15G043800 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ceric.33G045200.1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cre14.g620500 ESR1, DRN No description available 0.02 OrthoFinder output from all 47 species
Dac_g12673 No alias subgroup ERF-VI transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14879 ERF110 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37692 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g02579 WIN1, SHN1 cutin and suberin biosynthesis transcription factor... 0.04 OrthoFinder output from all 47 species
Dcu_g11101 LEP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11868 SHN3 cutin and suberin biosynthesis transcription factor... 0.04 OrthoFinder output from all 47 species
Dcu_g25683 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47766 RAP2.6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12115 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27365 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
GSVIVT01001089001 Rap2.6L RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01002195001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01006277001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01010629001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01032961001 LEP RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01036388001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Gb_03645 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
Gb_29263 DREB26 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Gb_41445 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os01g12440.1 TMO3, CRF2,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g64790.1 ERF110, LOC_Os01g64790 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g13710.1 TINY2, LOC_Os02g13710 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g34260.1 Rap2.6L, LOC_Os02g34260 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g34270.1 ERF110, LOC_Os02g34270 Ethylene-responsive transcription factor ERF114... 0.02 OrthoFinder output from all 47 species
LOC_Os02g38090.1 ESR1, DRN, LOC_Os02g38090 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g43820.1 ERF5, ATERF-5,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g43970.1 LOC_Os02g43970 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g52670.1 ERF110, LOC_Os02g52670 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g46250.1 ERF-6-6, ERF6,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g36100.1 ERF110, LOC_Os05g36100 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os06g08340.1 LOC_Os06g08340 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os06g10780.1 LOC_Os06g10780 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g36000.1 TINY2, LOC_Os06g36000 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g40150.1 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.03 OrthoFinder output from all 47 species
LOC_Os07g22730.1 ERF1, ATERF1,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g35240.1 LOC_Os08g35240 Ethylene-responsive transcription factor ERF017... 0.02 OrthoFinder output from all 47 species
Len_g57821 Rap2.6L not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16995 No alias cutin and suberin biosynthesis transcription factor... 0.03 OrthoFinder output from all 47 species
Lfl_g20776 No alias subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
MA_10430231g0010 WIN1, SHN1 transcription factor (ERF). SHN-type cutin and suberin... 0.03 OrthoFinder output from all 47 species
MA_17001g0020 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
MA_411387g0010 ERF2, ATERF2, ATERF-2 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_428433g0010 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
MA_500288g0010 ABI4, SAN5,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
MA_54341g0010 WIN1, SHN1 transcription factor (ERF). SHN-type cutin and suberin... 0.03 OrthoFinder output from all 47 species
MA_8574268g0010 TINY2 transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
MA_900190g0010 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
MA_99821g0010 TMO3, CRF2 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Mp6g08690.1 TINY2 transcription factor (DREB) 0.05 OrthoFinder output from all 47 species
Msp_g05560 No alias subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20272 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Msp_g25672 DREB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04652 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.05 OrthoFinder output from all 47 species
Nbi_g19264 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g26878 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30524 TMO3, CRF2 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30771 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38654 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44015 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g01623 No alias subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Pir_g42405 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Pnu_g02451 HRE2 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24749 No alias subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_23930V3.1 ERF-1, ATERF-1,... ethylene responsive element binding factor 1 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012223 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012659 No alias not classified & original description: CDS=1-1455 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013429 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021258 CRF5 subgroup ERF-VI transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023713 DEAR2 subgroup ERF-II transcription factor *(ERF19/20) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026324 ERF110 not classified & original description: CDS=572-2401 0.04 OrthoFinder output from all 47 species
Smo38494 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Smo415574 ERF110 No description available 0.02 OrthoFinder output from all 47 species
Solyc01g005630.3.1 RAP2.11, Solyc01g005630 transcription factor (ERF). transcription factor (ERN1) 0.04 OrthoFinder output from all 47 species
Solyc01g108240.3.1 RRTF1, Solyc01g108240 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc03g118190.4.1 Solyc03g118190 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc04g054910.4.1 Solyc04g054910 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc06g051840.1.1 CRF4, Solyc06g051840 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc06g065820.3.1 Solyc06g065820 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc08g007840.3.1 Solyc08g007840 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Solyc09g091950.1.1 Solyc09g091950 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Solyc10g050960.3.1 RRTF1, Solyc10g050960 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc10g050970.1.1 RRTF1, Solyc10g050970 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc12g056980.1.1 RAP2.4, Solyc12g056980 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Spa_g05595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44754 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014008_P002 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
Zm00001e014415_P001 TINY2, Zm00001e014415 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e016064_P001 RAP2.2, Zm00001e016064 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e019026_P001 CRF3, Zm00001e019026 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e022016_P001 Zm00001e022016 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e025840_P001 DREB2A, DREB2,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e026573_P001 Zm00001e026573 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e030585_P001 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.03 OrthoFinder output from all 47 species
Zm00001e031497_P001 ABI4, SAN5,... Ethylene-responsive transcription factor ABI4 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e035811_P001 PUCHI, Zm00001e035811 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e035837_P001 ERF72, EBP,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e036130_P001 RAP2.4, Zm00001e036130 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Zm00001e036201_P001 Zm00001e036201 Ethylene-responsive transcription factor ERF014... 0.02 OrthoFinder output from all 47 species
Zm00001e037241_P001 Zm00001e037241 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e037404_P001 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.05 OrthoFinder output from all 47 species
Zm00001e041288_P001 Zm00001e041288 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 171 221
No external refs found!