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  5. Pnu_g11272

Pnu_g11272


Description : mRNA endoribonuclease *(G3BP) & original description: none


Gene families : OG0000432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11272
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00228400 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G03640 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37261.t1 Aspi01Gene37261 mRNA endoribonuclease *(G3BP) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g00907 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19669 No alias mRNA endoribonuclease *(G3BP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008107001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_11766 No alias mRNA endoribonuclease (G3BP) 0.03 OrthoFinder output from all 47 species
Mp4g17080.1 No alias mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Solyc02g088920.4.1 Solyc02g088920 mRNA endoribonuclease (G3BP) 0.01 OrthoFinder output from all 47 species
Solyc09g059310.3.1 Solyc09g059310 mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Zm00001e022613_P001 Zm00001e022613 mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species
Zm00001e038048_P001 Zm00001e038048 mRNA endoribonuclease (G3BP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 323 389
IPR002075 NTF2_dom 23 141
No external refs found!