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  5. Als_g09424

Als_g09424


Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g09424

Target Alias Description ECC score Gene Family Method Actions
AT5G14320 No alias Ribosomal protein S13/S18 family 0.04 OrthoFinder output from all 47 species
Ala_g00666 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035921 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Dac_g26723 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g44492 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
LOC_Os03g49710.1 LOC_Os03g49710 component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g00631 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
Msp_g02627 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g09656 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g13107 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ppi_g02591 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Tin_g04300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 42 150
No external refs found!