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  5. Als_g07804

Als_g07804


Description : not classified & original description: none


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g07804

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008816 No alias not classified & original description: CDS=50-4432 0.04 OrthoFinder output from all 47 species
Cba_g12316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.37G065800.1 Ceric.37G065800 not classified & original description: pacid=50615955... 0.03 OrthoFinder output from all 47 species
Dcu_g10841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g10390.1 LOC_Os07g10390 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432916g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g62455 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc10g080630.2.1 Solyc10g080630 Spliceosome-associated protein 130 A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g05247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1114 1373
IPR018846 Cleavage/polyA-sp_fac_asu_N 100 674
No external refs found!