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  5. Als_g06579

Als_g06579 (ICU4, ATHB15, ATHB-15, CNA)


Aliases : ICU4, ATHB15, ATHB-15, CNA

Description : transcriptional co-regulator *(ZPR) & original description: none


Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g06579
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00033940 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.02 OrthoFinder output from all 47 species
AT5G60690 IFL1, IFL, REV Homeobox-leucine zipper family protein / lipid-binding... 0.03 OrthoFinder output from all 47 species
Ala_g07482 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17712 ICU4, ATHB15,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27486 ICU4, ATHB15,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20722 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0250.g060252 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original... 0.03 OrthoFinder output from all 47 species
Cba_g06986 HB-8, ATHB8, ATHB-8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43873 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.17G020900.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.18G068400.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G005400.1 HB-8, ATHB8,... transcriptional co-regulator *(ZPR) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g01890.1 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
LOC_Os10g33960.1 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
LOC_Os12g41860.1 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.06 OrthoFinder output from all 47 species
Nbi_g05442 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19565 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44133 HB-8, ATHB8, ATHB-8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02329 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g024070.3.1 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Spa_g16356 HB-8, ATHB8, ATHB-8 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000073_P001 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Zm00001e004553_P004 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Zm00001e005034_P001 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Zm00001e018118_P002 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Zm00001e025995_P002 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Zm00001e039093_P002 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 52 109
No external refs found!