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  5. Als_g04983

Als_g04983


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g04983

Target Alias Description ECC score Gene Family Method Actions
AT3G02340 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13228 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g01720 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g06570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g11834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24805 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g01127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g06770.1 LOC_Os09g06770 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g30265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Pnu_g08831 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019777 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g15447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 11 42
IPR001841 Znf_RING 169 211
No external refs found!