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  5. Pnu_g10727

Pnu_g10727 (RPL4)


Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g10727
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00221060 RPL4,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT1G07320 RPL4 ribosomal protein L4 0.02 OrthoFinder output from all 47 species
Ala_g05983 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g13415 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15325.t1 RPL4, Aspi01Gene15325 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.09G057300.1 RPL4, Ceric.09G057300 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g06106 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dde_g06392 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01024788001 RPL4 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
Len_g13257 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp1g18940.1 RPL4 component psRPL4 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Nbi_g14226 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g08496 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ppi_g15929 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g061900.3.1 RPL4, Solyc07g061900 component psRPL4 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g08728 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g24110 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 110 291
No external refs found!