Aliases : PAB2, PABP2, ATPAB2
Description : mRNA poly-A-tail binding factor *(PABP) & original description: none
Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00021244.20 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g07805 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01009461001 | PAB8, PABP8 | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g42600.2 | PAB2, PABP2,... | mRNA poly-A-tail binding factor (PABP) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g02700.1 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g04141 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.06 | OrthoFinder output from all 47 species | |
Msp_g06278 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g03060 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g17615 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g26046 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003779 | actin binding | IEP | HCCA |
MF | GO:0003993 | acid phosphatase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0007010 | cytoskeleton organization | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
BP | GO:0016197 | endosomal transport | IEP | HCCA |
BP | GO:0016482 | cytosolic transport | IEP | HCCA |
MF | GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | IEP | HCCA |
MF | GO:0016791 | phosphatase activity | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0030118 | clathrin coat | IEP | HCCA |
CC | GO:0030120 | vesicle coat | IEP | HCCA |
CC | GO:0030125 | clathrin vesicle coat | IEP | HCCA |
CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | HCCA |
CC | GO:0030132 | clathrin coat of coated pit | IEP | HCCA |
CC | GO:0030906 | retromer, cargo-selective complex | IEP | HCCA |
MF | GO:0031267 | small GTPase binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | HCCA |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
MF | GO:0051020 | GTPase binding | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
No external refs found! |