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  5. Als_g03019

Als_g03019 (SYP32, ATSYP32)


Aliases : SYP32, ATSYP32

Description : Qa-type SYP3-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0002044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002044_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g03019
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00173p00012350 SYP32, ATSYP32,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Lfl_g08984 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Msp_g02410 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Nbi_g03561 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Zm00001e016695_P001 SYP32, ATSYP32,... SYP3-group Qa-type SNARE component 0.03 OrthoFinder output from all 47 species
Zm00001e025913_P001 SYP32, ATSYP32,... SYP3-group Qa-type SNARE component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 287 337
IPR021538 Syntaxin-5_N 1 22
No external refs found!