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  5. Als_g02552

Als_g02552


Description : scaffold nucleoporin of nuclear pore complex *(NUP75/85) & original description: none


Gene families : OG0004258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g02552

Target Alias Description ECC score Gene Family Method Actions
Cba_g26746 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.04 OrthoFinder output from all 47 species
Ceric.05G088400.1 Ceric.05G088400 scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Cre08.g383650 No alias No description available 0.03 OrthoFinder output from all 47 species
Ehy_g12714 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Mp1g11600.1 No alias NUP75/85 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Ore_g22939 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0331.g027262 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR011502 Nucleoporin_Nup85 88 687
No external refs found!