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  5. Als_g01127

Als_g01127 (VCL1, EMB258, MAN)


Aliases : VCL1, EMB258, MAN

Description : component *(VPS16/VCL1) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00200210 VCL1, EMB258,... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Aev_g06149 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Aop_g08601 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Dcu_g04890 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
GSVIVT01020844001 VCL1, EMB258, MAN Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Gb_09954 VCL1, EMB258, MAN component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.04 OrthoFinder output from all 47 species
LOC_Os01g47650.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species
Lfl_g10179 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.06 OrthoFinder output from all 47 species
Mp6g01660.1 VCL1, EMB258, MAN component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species
Ppi_g03195 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Sam_g25104 No alias component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Solyc07g056220.3.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.07 OrthoFinder output from all 47 species
Tin_g08365 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:2000638 regulation of SREBP signaling pathway IEP HCCA
BP GO:2000640 positive regulation of SREBP signaling pathway IEP HCCA
InterPro domains Description Start Stop
IPR006926 Vps16_N 7 406
IPR006925 Vps16_C 505 825
No external refs found!