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  5. Als_g01056

Als_g01056 (EMB1265, ATCPSF100,...)


Aliases : EMB1265, ATCPSF100, CPSF100, ESP5

Description : component *(CPSF100/Ydh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0005611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01056

Target Alias Description ECC score Gene Family Method Actions
Aev_g10848 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ala_g10439 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.09G061000.1 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Cre12.g487600 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 OrthoFinder output from all 47 species
Dcu_g01795 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
LOC_Os09g39590.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Mp3g01860.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g04524 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR022712 Beta_Casp 242 363
IPR011108 RMMBL 543 592
IPR001279 Metallo-B-lactamas 22 198
IPR025069 Cpsf2_C 666 741
No external refs found!