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  5. Pnu_g09622

Pnu_g09622 (LHCA1)


Aliases : LHCA1

Description : not classified & original description: none


Gene families : OG0008436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g09622
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Aop_g20593 LHCA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23799 LHCA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23800 LHCA1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cre07.g344950 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.02 OrthoFinder output from all 47 species
Cre12.g508750 LHCA2*1, LHCA6 Photosystem I chlorophyll a/b-binding protein 6,... 0.02 OrthoFinder output from all 47 species
Tin_g21855 LHCA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 8 146
No external refs found!