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  5. Pnu_g09202

Pnu_g09202


Description : not classified & original description: none


Gene families : OG0001257 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001257_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g09202
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT3G10770 No alias Single-stranded nucleic acid binding R3H protein 0.03 OrthoFinder output from all 47 species
Als_g08651 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g34070.1 LOC_Os05g34070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g24819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g007110.2.1 Solyc11g007110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e009475_P001 Zm00001e009475 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e027067_P002 Zm00001e027067 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001374 R3H_dom 104 153
IPR024771 SUZ 196 248
No external refs found!