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  5. Pnu_g08692

Pnu_g08692


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g08692

Target Alias Description ECC score Gene Family Method Actions
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.02 OrthoFinder output from all 47 species
Adi_g117729 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g04427 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13465.t1 Aspi01Gene13465 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G007100.1 Ceric.10G007100 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G076000.1 Ceric.13G076000 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G050600.1 Ceric.19G050600 not classified & original description: pacid=50576234... 0.03 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.02 OrthoFinder output from all 47 species
Dcu_g08130 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Dcu_g17295 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Lfl_g40942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g23720.1 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g07687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59910 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000115 No alias platform ATPase CDC48 & original description: CDS=3649-4851 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025558 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019211 phosphatase activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 275 297
IPR000571 Znf_CCCH 198 223
IPR000571 Znf_CCCH 338 364
No external refs found!