1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g07327

Pnu_g07327 (KNAT3)


Aliases : KNAT3

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g07327

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 KNAT3,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.03 OrthoFinder output from all 47 species
Adi_g107007 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11433 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06749 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016023 KNAT6, KNAT6L, KNAT6S not classified & original description: CDS=247-1020 0.04 OrthoFinder output from all 47 species
Azfi_s0574.g078063 KNAT3 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g09456 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06109 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00573 BUM1, SHL, STM,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
MA_3582g0010 KNAT3 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
MA_486460g0010 KNAT3 Homeobox protein knotted-1-like 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_486460g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g19225 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25139 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35975 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36039 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38004 KNAT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001773 KNAT6, KNAT6L, KNAT6S not classified & original description: CDS=1-1014 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018782 KNAT2, ATK1 not classified & original description: CDS=1-1071 0.02 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR005539 ELK_dom 428 449
IPR005541 KNOX2 323 370
IPR008422 Homeobox_KN_domain 468 507
IPR005540 KNOX1 262 302
No external refs found!