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  5. Pnu_g06948

Pnu_g06948 (AT-TCP20, TCP20, PCF1, ATTCP20)


Aliases : AT-TCP20, TCP20, PCF1, ATTCP20

Description : circadian clock activation factor *(TCP20) & original description: none


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06948

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00035550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Adi_g086308 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01440 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g60707 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013244 No alias TCP-type transcription factor & original description: CDS=1-1674 0.03 OrthoFinder output from all 47 species
Cba_g45072 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05364 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023283001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01027588001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42380.1 LOC_Os02g42380 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os08g43160.1 LOC_Os08g43160 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
LOC_Os11g07460.1 LOC_Os11g07460 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
LOC_Os12g07480.1 LOC_Os12g07480 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Lfl_g32671 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_81710g0010 No alias transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
MA_96244g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g09490.1 No alias transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Ore_g07074 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25570 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00471 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g008230.4.1 Solyc01g008230 transcription factor (TCP). CHE circadian clock repression factor 0.03 OrthoFinder output from all 47 species
Solyc01g103780.4.1 Solyc01g103780 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc02g068200.1.1 AT-TCP20, TCP20,... transcription factor (TCP). TCP20 circadian clock... 0.02 OrthoFinder output from all 47 species
Solyc05g007420.2.1 Solyc05g007420 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Tin_g01170 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015209_P001 Zm00001e015209 transcription factor (TCP). CHE circadian clock repression factor 0.03 OrthoFinder output from all 47 species
Zm00001e018800_P001 AT-TCP20, TCP20,... transcription factor (TCP). TCP20 circadian clock... 0.03 OrthoFinder output from all 47 species
Zm00001e040592_P001 Zm00001e040592 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 249 342
No external refs found!