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  5. Pnu_g06913

Pnu_g06913 (UVH6, ATXPD)


Aliases : UVH6, ATXPD

Description : component *(XPD) of TFIIh basal transcription factor complex & original description: none


Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06913
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00038580 UVH6, ATXPD,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Dac_g03807 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Len_g03875 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Mp6g12580.1 UVH6, ATXPD subunit XPD of multifunctional TFIIh complex. component... 0.02 OrthoFinder output from all 47 species
Sam_g25101 No alias component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Zm00001e040409_P001 UVH6, ATXPD,... subunit XPD of multifunctional TFIIh complex. component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR010614 DEAD_2 71 255
IPR006555 ATP-dep_Helicase_C 523 696
IPR010643 HBB 269 411
IPR006935 Helicase/UvrB_N 18 63
No external refs found!