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  5. Pnu_g03810

Pnu_g03810 (ATBPC4, BPC4, BBR)


Aliases : ATBPC4, BPC4, BBR

Description : BBR/BPC-type transcription factor & original description: none


Gene families : OG0000626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03810

Target Alias Description ECC score Gene Family Method Actions
Adi_g055055 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01685 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042778 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0385.g067505 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g17226 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12271 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13905 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g008380.4.1 ATBPC1, BPC1,... transcription factor (BBR/BPC) 0.03 OrthoFinder output from all 47 species
Zm00001e003633_P001 ATBPC2, BPC2,... transcription factor (BBR/BPC) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010409 GAGA-bd_tscrpt_act 37 338
No external refs found!