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  5. Pnu_g03688

Pnu_g03688 (RPS5B, ATRPS5B)


Aliases : RPS5B, ATRPS5B

Description : component *(uS7) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03688
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT2G37270 RPS5B, ATRPS5B ribosomal protein 5B 0.03 OrthoFinder output from all 47 species
AT3G11940 AML1, RPS5A, ATRPS5A ribosomal protein 5A 0.03 OrthoFinder output from all 47 species
Azfi_s0302.g063751 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.09G021200.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021332.10 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
MA_10428487g0010 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp3g10570.1 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.02 OrthoFinder output from all 47 species
Pp3c8_16860V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.02 OrthoFinder output from all 47 species
Solyc11g042610.2.1 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e025608_P002 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e031425_P002 AML1, RPS5A,... component RPS5 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 51 197
No external refs found!