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  5. Pnu_g03110

Pnu_g03110


Description : LSU processome assembly factor *(NLE) & original description: none


Gene families : OG0005914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03110
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene51641.t1 Aspi01Gene51641 LSU processome assembly factor *(NLE) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os11g38170.2 LOC_Os11g38170 LSU processome assembly factor (NLE) 0.04 OrthoFinder output from all 47 species
Ore_g19980 No alias LSU processome assembly factor *(NLE) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 236 271
IPR001680 WD40_repeat 104 141
IPR001680 WD40_repeat 359 393
IPR001680 WD40_repeat 445 476
IPR001680 WD40_repeat 194 231
IPR001680 WD40_repeat 146 183
IPR001680 WD40_repeat 398 435
IPR001680 WD40_repeat 276 349
IPR012972 NLE 27 76
No external refs found!