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  5. Pnu_g01279

Pnu_g01279 (LCB2)


Aliases : LCB2

Description : EC_2.3 acyltransferase & original description: none


Gene families : OG0003878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g01279
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT3G48780 SPT1, ATSPT1 serine palmitoyltransferase 1 0.03 OrthoFinder output from all 47 species
AT5G23670 LCB2 long chain base2 0.03 OrthoFinder output from all 47 species
Als_g13097 LCB2 EC_2.3 acyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g43078 LCB2 EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008621001 LCB2 Lipid metabolism.sphingolipid metabolism.serine... 0.03 OrthoFinder output from all 47 species
Gb_24136 LCB2 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g70380.1 LCB2, LOC_Os01g70380 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.02 OrthoFinder output from all 47 species
Pir_g11255 LCB2 EC_2.3 acyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g072320.4.1 LCB2, Solyc06g072320 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.02 OrthoFinder output from all 47 species
Zm00001e021503_P002 LCB2, Zm00001e021503 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.02 OrthoFinder output from all 47 species
Zm00001e021504_P001 LCB2, Zm00001e021504 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 101 459
No external refs found!