1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g01017

Pnu_g01017


Description : not classified & original description: none


Gene families : OG0007077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007077_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g01017
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00123220 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
Ceric.26G023000.1 Ceric.26G023000 not classified & original description: pacid=50600038... 0.05 OrthoFinder output from all 47 species
Dcu_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g61700.1 LOC_Os01g61700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g10815 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g00204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015600 No alias not classified & original description: CDS=202-753 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0030163 protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003769 ClpS_core 120 185
No external refs found!