Lfl_g38767 (SOC1, AGL20, ATSOC1)

Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g38767

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00267050	AGL6,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00047p00190220	AGL4, SEP2,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT2G14210	ANR1, AGL44	AGAMOUS-like 44	0.03	OrthoFinder output from all 47 species
AT3G30260	AGL79	AGAMOUS-like 79	0.02	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.02	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.04	OrthoFinder output from all 47 species
Aev_g04765	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15814.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene15816.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49755.t1	Aspi01Gene49755	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62317.t1	ANR1, AGL44,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g08677	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.08G048300.1	AGL42, Ceric.08G048300	MADS/AGL-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.08G048600.1	AGL10, CAL1,...	not classified & original description: pacid=50638045...	0.06	OrthoFinder output from all 47 species
Ceric.27G057900.1	STK, AGL11,...	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.33G065500.1	AGL13, Ceric.33G065500	MADS/AGL-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dac_g04574	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g10747	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010221001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01012249001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
Gb_28587	AGL8, FUL	transcription factor (MADS/AGL)	0.08	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os10g39130.1	GL19, AGL19,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Len_g23837	AGL6	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g36451	AGL6	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_19387g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	OrthoFinder output from all 47 species
MA_899014g0010	SVP, AGL22	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Ore_g42895	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g48804	AGL8, FUL	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.04	OrthoFinder output from all 47 species
Pir_g51807	AGL15	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c16_12230V3.1	Pp3c16_12230	No annotation	0.01	OrthoFinder output from all 47 species
Ppi_g29083	ANR1, AGL44	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g06712	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13249	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g150138.1.1	Solyc07g150138	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc12g056460.3.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Spa_g12045	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g26308	AGL15	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g11248	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015447_P001	AGL6, Zm00001e015447	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e016964_P001	GL19, AGL19,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	90	157

External Links

No external refs found!

Lfl_g38767 (SOC1, AGL20, ATSOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation