Cba_g78270 (RAP2.12)

Aliases : RAP2.12

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g78270
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g015562	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060280	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.03	OrthoFinder output from all 47 species
Adi_g100845	ATERF3, ERF3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g40001	No alias	cutin and suberin biosynthesis transcription factor...	0.03	OrthoFinder output from all 47 species
Als_g38628	No alias	cutin and suberin biosynthesis transcription factor...	0.03	OrthoFinder output from all 47 species
Aspi01Gene05678.t1	Aspi01Gene05678	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene08499.t1	ATERF3, ERF3,...	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g08691	No alias	cutin and suberin biosynthesis transcription factor...	0.03	OrthoFinder output from all 47 species
Ehy_g28886	DEAR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008649001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
GSVIVT01011465001	RAP2.11	External stimuli response.biotic...	0.03	OrthoFinder output from all 47 species
GSVIVT01019519001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01021146001	ERF-1, ATERF-1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01028315001	ERF1, ATERF1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01036388001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01036389001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
Gb_23870	No alias	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
LOC_Os02g54160.2	RAP2.2, LOC_Os02g54160	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g34730.1	LOC_Os05g34730	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os10g41130.1	LOC_Os10g41130	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Len_g09253	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
MA_10266433g0010	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
MA_115502g0010	No alias	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_179692g0020	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
MA_66442g0010	No alias	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_9160409g0010	No alias	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Mp1g20040.1	ATERF4, RAP2.5,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Mp4g00380.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp5g11100.1	ATERF4, RAP2.5,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp6g04880.1	DREB26	Ethylene-responsive transcription factor ERF008...	0.02	OrthoFinder output from all 47 species
Msp_g12103	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g21529	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g36821	DEAR1, CEJ1, ATERF#011	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g31608	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g39807	DEAR1, CEJ1, ATERF#011	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g41510	RAP2.11	transcription factor *(ERN1) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g22702	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g24749	No alias	subgroup ERF-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g24750	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33487	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc05g052030.1.1	Solyc05g052030	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc12g008350.3.1	TINY2, Solyc12g008350	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Spa_g08637	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g41579	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Tin_g26876	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Zm00001e031895_P001	Zm00001e031895	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Zm00001e041288_P001	Zm00001e041288	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	122	170

External Links

No external refs found!

Cba_g78270 (RAP2.12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation