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  5. Lfl_g38407

Lfl_g38407 (VPS2.3)


Aliases : VPS2.3

Description : component *(VPS2/CHMP2) of ESCRT-III complex & original description: none


Gene families : OG0003140 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003140_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g38407
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Als_g11633 VPS2.3 component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01037973001 VPS2.2 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.09 OrthoFinder output from all 47 species
Pp3c3_2240V3.1 VPS2.3, Pp3c3_2240 vacuolar protein sorting-associated protein 2.3 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0304.g027216 VPS2.3 not classified & original description: CDS=1-639 0.03 OrthoFinder output from all 47 species
Sam_g30316 No alias component *(VPS2/CHMP2) of ESCRT-III complex & original... 0.12 OrthoFinder output from all 47 species
Smo266789 VPS2.3 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.06 OrthoFinder output from all 47 species
Zm00001e012414_P003 VPS2.2, Zm00001e012414 component VPS2/CHMP2 of ESCRT-III complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 68 228
No external refs found!