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  5. Cba_g77134

Cba_g77134


Description : component *(Pcf11) of Cleavage Factor II (CF-IIm) complex & original description: none


Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g77134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00210200 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.02 OrthoFinder output from all 47 species
Adi_g019422 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Ala_g10884 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.05 OrthoFinder output from all 47 species
Ala_g11854 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.05 OrthoFinder output from all 47 species
Als_g23300 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Als_g23728 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Als_g32504 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Aob_g04503 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Aop_g22117 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Ceric.04G047300.1 Ceric.04G047300 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.04 OrthoFinder output from all 47 species
Ceric.39G024000.1 Ceric.39G024000 not classified & original description: pacid=50583322... 0.02 OrthoFinder output from all 47 species
Dac_g13952 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.04 OrthoFinder output from all 47 species
Dcu_g09800 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.05 OrthoFinder output from all 47 species
Ehy_g07114 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.04 OrthoFinder output from all 47 species
Ehy_g07144 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
GSVIVT01012646001 PCFS4 RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 OrthoFinder output from all 47 species
GSVIVT01033783001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.02 OrthoFinder output from all 47 species
Gb_26268 PCFS4 component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 OrthoFinder output from all 47 species
LOC_Os08g08830.1 PCFS4, LOC_Os08g08830 component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.02 OrthoFinder output from all 47 species
Len_g08651 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Len_g09019 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Lfl_g11409 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Lfl_g16594 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 OrthoFinder output from all 47 species
Nbi_g08557 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.05 OrthoFinder output from all 47 species
Ore_g13187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43016 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Ore_g44715 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Pir_g02318 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Ppi_g08449 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009360 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Sam_g12428 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Spa_g29814 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Spa_g48755 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.02 OrthoFinder output from all 47 species
Tin_g06139 PCFS4 component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Zm00001e009485_P001 Zm00001e009485 component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 OrthoFinder output from all 47 species
Zm00001e033620_P001 Zm00001e033620 component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.02 OrthoFinder output from all 47 species
Zm00001e039948_P002 PCFS4, Zm00001e039948 component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR006569 CID_dom 166 264
No external refs found!