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  5. Lfl_g38057

Lfl_g38057


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g38057

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00004p00121730 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00027p00223150 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g48141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g07984 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g15243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g50922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e012880_P004 Zm00001e012880 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 286 354
IPR000504 RRM_dom 366 429
IPR000504 RRM_dom 461 525
No external refs found!