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  5. Cba_g72735

Cba_g72735 (MGP)


Aliases : MGP

Description : C2H2 subclass IDD transcription factor & original description: none


Gene families : OG0000265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g72735

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270520 MGP,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
AMTR_s00007p00061550 JKD,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00106830 IDD2, AtIDD2,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
AT5G44160 NUC C2H2-like zinc finger protein 0.03 OrthoFinder output from all 47 species
Adi_g021882 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g56444 MGP C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0223.g058834 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g17431 IDD14, AtIDD14 C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01035391001 AtIDD7, IDD7 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
LOC_Os01g14010.1 MGP, LOC_Os01g14010 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os01g70870.1 IDD2, AtIDD2,... C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g10140.1 LOC_Os03g10140 C2H2 zinc finger transcription factor. elicitor peptide... 0.02 OrthoFinder output from all 47 species
Len_g01314 NUC C2H2 subclass IDD transcription factor & original... 0.04 OrthoFinder output from all 47 species
MA_26324g0010 MGP C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g07810 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g08806 IDD14, AtIDD14 C2H2 subclass IDD transcription factor & original... 0.05 OrthoFinder output from all 47 species
Pir_g38471 IDD14, AtIDD14 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pnu_g09916 MGP C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g31074 MGP C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g32378 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g15199 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020376 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g16406 No alias C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc01g099340.3.1 MGP, Solyc01g099340 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc04g080130.3.1 IDD2, AtIDD2,... C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc06g062670.3.1 AtIDD7, IDD7,... C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Tin_g30837 MGP C2H2 subclass IDD transcription factor & original... 0.05 OrthoFinder output from all 47 species
Zm00001e003968_P002 IDD4, AtIDD4,... C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e010628_P002 MGP, Zm00001e010628 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 162 184
No external refs found!