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  5. Cba_g72088

Cba_g72088


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0001347 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g72088
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT5G40880 No alias WD-40 repeat family protein / zfwd3 protein (ZFWD3) 0.03 OrthoFinder output from all 47 species
AT5G51980 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g22929 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Als_g33680 ZFWD1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene29403.t1 Aspi01Gene29403 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene41876.t1 Aspi01Gene41876 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58166.t1 Aspi01Gene58166 regulatory protein of RNA homeostasis & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene67987.t1 ZFWD1, Aspi01Gene67987 regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene68008.t1 ZFWD1, Aspi01Gene68008 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69793.t1 Aspi01Gene69793 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12883 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g37072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 101 137
IPR001680 WD40_repeat 236 269
IPR001680 WD40_repeat 273 309
No external refs found!