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  5. Cba_g57127

Cba_g57127


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g57127
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g114117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0336.g065546 No alias not classified & original description: CDS=1-2493 0.05 OrthoFinder output from all 47 species
Ceric.12G037000.1 Ceric.12G037000 not classified & original description: pacid=50600637... 0.03 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.04 OrthoFinder output from all 47 species
Dac_g16300 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09299 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g21700 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g08308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006174 No alias not classified & original description: CDS=16-1263 0.04 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo441948 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.02 OrthoFinder output from all 47 species
Spa_g08291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15086 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g41235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49332 CRM3, HCF152 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g12024 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 564
IPR002885 Pentatricopeptide_repeat 433 453
IPR002885 Pentatricopeptide_repeat 278 329
IPR002885 Pentatricopeptide_repeat 464 512
No external refs found!