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  5. Cba_g56769

Cba_g56769 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g56769

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265290 PTB1, PTB,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Als_g10256 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G100400.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.02 OrthoFinder output from all 47 species
Gb_07420 PTB1, PTB, ATPTB1 Polypyrimidine tract-binding protein homolog 1... 0.02 OrthoFinder output from all 47 species
Gb_07421 PTB2, ATPTB2 Polypyrimidine tract-binding protein homolog 2... 0.03 OrthoFinder output from all 47 species
LOC_Os01g43170.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07274 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g36099 No alias RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo104811 PTB2, ATPTB2 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Zm00001e020441_P003 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e022452_P003 PTB1, PTB,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR021790 PTBP1-like_RRM2 242 320
IPR000504 RRM_dom 22 72
No external refs found!