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  5. Lfl_g35781

Lfl_g35781 (PA200)


Aliases : PA200

Description : proteasome core particle assembly factor *(PA200) & original description: none


Gene families : OG0001792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001792_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g35781

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00109710 PA200,... Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G13330 PA200 proteasome activating protein 200 0.03 OrthoFinder output from all 47 species
Azfi_s0197.g057334 PA200 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
Ceric.17G047600.1 PA200, Ceric.17G047600 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
Ceric.28G034600.1 PA200, Ceric.28G034600 proteasome core particle assembly factor *(PA200) &... 0.03 OrthoFinder output from all 47 species
Cre14.g628702 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_04235 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g11444 PA200 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
MA_10433922g0010 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_51487g0010 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g15810.1 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g17276 PA200 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011208 PA200 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
Sam_g26475 No alias proteasome core particle assembly factor *(PA200) &... 0.03 OrthoFinder output from all 47 species
Sam_g50553 No alias proteasome core particle assembly factor *(PA200) &... 0.02 OrthoFinder output from all 47 species
Smo179234 PA200 Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g07611 PA200 proteasome core particle assembly factor *(PA200) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR021843 PSME4_C 1743 1828
IPR032430 Blm10_mid 548 858
IPR032430 Blm10_mid 313 529
No external refs found!