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Heatmap: Cluster_86 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
2.96 2.45 2.45 2.72 3.62 4.45 4.19 4.77 4.02 4.0 4.37 3.23 2.12 1.6 2.49 3.02 1.85 0.89 2.03 2.96 1.76 7.51 1.78 2.14 3.42 4.56 3.52 3.34 2.33 2.25 1.95 1.82
Smo110422 (OTP82)
 14.49 10.19 8.85 12.81 15.08 11.94 14.81 18.11 23.06 17.31 14.75 15.74 10.56 5.53 6.61 14.77 10.51 3.19 15.06 0.0 2.02 16.37 14.88 12.19 1.7 30.23 16.41 16.17 15.86 15.84 12.9 11.88
4.6 6.24 5.91 5.88 6.52 6.01 5.84 5.51 5.02 4.66 4.53 5.52 5.79 9.38 12.26 6.22 1.51 0.57 2.08 0.02 0.0 4.53 2.27 2.33 1.06 5.58 8.46 9.49 1.76 2.26 1.09 0.91
66.26 70.92 65.1 89.3 84.15 83.49 81.92 93.47 82.22 74.99 72.85 71.08 82.3 103.87 98.04 93.34 45.44 35.72 78.29 59.32 89.83 94.9 61.12 66.88 129.68 132.48 106.36 108.2 53.49 52.84 45.72 40.65
Smo143637 (PPa1)
 45.6 36.72 32.45 28.68 29.1 30.64 26.86 35.64 37.11 33.43 39.11 39.58 20.77 36.97 34.18 20.14 22.2 12.6 25.73 10.01 53.76 46.66 22.01 23.78 27.67 67.47 64.85 51.58 27.73 27.78 17.18 16.03
Smo143777 (FIE)
 18.98 15.11 16.17 17.27 18.65 20.06 19.19 23.89 27.13 25.33 24.66 22.33 14.58 13.7 22.01 16.98 12.01 6.38 18.08 6.32 7.48 26.76 15.0 17.37 10.61 34.62 26.26 28.77 13.85 13.88 15.7 12.32
Smo230635 (QSOX2)
 18.78 19.45 19.25 18.97 18.69 19.94 17.35 19.94 21.29 20.23 25.66 19.73 16.97 33.56 30.61 18.22 11.89 5.44 16.1 10.78 2.37 19.51 12.99 13.41 6.71 20.77 14.51 16.07 11.27 12.87 13.39 15.65
14.99 14.67 13.81 16.38 20.49 19.46 19.09 24.06 21.92 19.22 17.33 15.89 17.14 10.3 15.29 15.28 7.74 7.66 15.73 8.25 7.41 25.61 10.91 15.15 27.38 34.3 33.26 25.69 11.4 12.33 12.97 18.82
26.38 27.44 29.58 29.4 33.46 32.34 29.76 30.07 26.74 26.76 25.68 23.07 26.22 30.32 38.24 29.42 17.07 15.62 27.01 11.67 7.34 37.22 23.58 26.89 14.34 28.54 31.03 31.35 16.82 18.98 15.79 17.5
1.42 1.31 0.79 1.02 1.61 1.71 1.18 1.49 0.93 1.74 1.42 1.47 0.35 0.27 1.09 0.75 0.94 0.74 1.97 1.24 0.14 1.98 0.87 0.66 1.79 1.58 3.33 2.7 0.89 0.99 0.8 0.79
6.05 5.76 4.69 5.23 6.02 5.47 5.22 5.92 5.13 7.01 7.02 6.04 2.56 3.05 5.21 3.41 3.87 0.21 3.9 2.55 4.57 10.79 3.16 3.29 6.64 10.86 9.52 12.02 4.05 4.15 3.22 2.65
44.1 45.28 50.54 51.12 57.85 50.64 58.5 65.11 60.3 58.76 54.21 45.65 52.92 58.24 66.77 54.38 37.16 31.94 44.39 44.31 53.04 122.01 42.38 47.18 94.25 86.97 111.5 99.4 48.49 48.47 57.13 54.57
Smo404911 (ADL2)
 4.94 5.22 6.14 7.41 7.65 6.82 7.02 7.74 7.62 8.71 7.57 6.42 5.57 8.43 11.91 6.62 4.21 4.01 7.24 2.63 5.08 21.73 4.56 4.51 9.76 14.23 11.3 11.01 4.77 4.62 5.09 4.65
10.31 11.05 8.41 11.04 16.52 12.37 13.61 16.49 16.07 12.52 15.28 12.39 15.94 15.96 19.64 15.75 5.5 8.65 14.68 10.03 7.5 22.31 13.42 14.5 31.15 28.88 31.7 33.99 9.52 10.18 8.48 5.87
27.35 30.92 34.79 32.36 39.66 36.06 36.03 34.08 30.14 31.43 30.94 27.54 24.34 25.85 36.54 26.72 20.62 16.13 28.09 19.45 24.63 47.57 21.84 22.08 12.07 42.02 48.22 48.05 20.58 20.92 21.8 21.06
19.23 21.74 16.23 24.99 18.18 20.21 16.66 18.53 14.12 14.96 14.68 15.6 4.9 20.52 29.51 5.77 5.77 8.48 21.61 20.29 15.27 24.74 7.49 7.55 11.76 28.15 39.74 39.48 4.77 5.14 3.85 3.85
Smo407378 (GSTU25)
 57.16 68.09 78.5 65.04 72.34 65.7 92.95 69.36 79.83 76.41 73.6 63.24 10.12 52.72 70.59 26.0 43.77 28.92 42.0 4.07 26.25 126.54 18.18 15.86 21.5 145.71 163.0 107.55 27.21 30.34 19.92 15.75
13.13 10.02 14.51 13.26 11.87 14.15 11.09 18.66 16.97 16.05 16.33 13.7 10.7 13.24 18.54 11.26 13.23 4.97 15.02 2.54 23.6 38.72 13.79 13.95 26.78 29.73 33.07 30.83 12.56 11.48 12.62 14.36
4.69 6.85 5.6 4.92 5.64 5.23 5.29 6.99 7.03 4.43 5.81 6.45 5.87 4.13 4.78 6.26 3.04 0.24 4.91 1.05 1.04 6.98 3.93 3.7 2.13 13.48 5.35 5.83 3.68 3.86 2.38 2.39
Smo408729 (AAT2)
 1.08 1.48 0.54 0.63 0.56 0.68 1.6 2.66 1.79 1.41 1.75 1.5 0.0 4.58 3.12 0.05 0.25 0.26 0.19 0.0 0.0 4.32 0.0 0.05 1.89 3.37 1.87 1.29 0.19 0.53 0.0 0.0
7.79 6.99 8.29 9.01 12.55 10.13 10.29 12.86 12.55 11.62 10.42 8.82 7.38 6.2 13.95 7.15 4.26 0.9 6.76 4.12 6.71 19.94 5.47 6.59 9.84 20.59 21.77 18.39 4.45 4.48 5.33 8.72
5.45 5.21 5.72 7.07 7.33 9.03 11.49 14.01 16.74 17.98 17.33 10.0 7.99 5.04 11.48 9.57 4.0 3.6 7.66 6.7 2.93 11.86 4.89 5.27 8.32 17.77 16.7 14.98 7.7 7.9 4.69 5.27
Smo416931 (TDP1)
 0.69 0.76 0.42 0.73 1.1 0.81 1.15 1.43 1.27 0.94 1.27 0.76 1.43 0.68 1.98 1.59 0.94 0.35 2.3 0.21 0.0 2.71 1.87 1.76 0.39 4.82 1.34 1.25 0.89 1.54 1.09 0.63
0.09 0.0 0.84 0.0 0.0 0.0 0.18 0.0 0.0 0.0 0.0 0.0 0.27 0.17 0.57 0.27 0.16 0.52 0.89 0.37 0.88 2.98 0.08 0.58 0.37 3.07 0.85 0.49 0.51 0.25 0.09 0.0
19.19 18.43 18.66 19.81 15.18 17.65 18.95 20.11 23.65 23.62 24.25 22.54 21.81 20.41 37.39 30.54 17.57 11.54 26.85 18.54 28.95 56.23 14.67 16.79 17.58 55.37 26.65 30.02 21.36 21.36 12.29 10.88
Smo420649 (HIT1)
 37.77 38.66 36.7 39.01 36.22 35.61 36.93 44.41 43.5 43.92 44.76 40.84 38.72 44.85 65.25 40.76 22.44 14.86 30.98 24.65 16.95 69.09 28.23 30.64 17.51 78.06 54.44 52.05 24.11 26.52 33.93 38.57
25.37 27.96 26.58 27.33 27.36 24.11 18.56 24.89 23.24 23.55 24.8 22.98 19.02 26.53 49.36 29.28 12.77 8.44 20.27 21.8 11.65 21.64 14.14 14.39 6.04 47.24 36.79 42.95 15.04 14.39 19.1 12.8
4.59 4.86 4.39 4.73 5.29 6.37 5.73 6.16 6.7 5.6 4.41 5.2 5.87 4.17 11.39 6.23 4.3 0.0 6.11 2.53 7.35 24.32 4.81 5.22 12.71 21.05 10.74 11.92 4.06 3.69 1.87 3.02
6.87 5.03 5.16 7.59 7.68 7.98 12.6 12.12 11.44 11.28 9.11 10.09 0.52 2.83 3.84 0.64 5.3 3.08 4.41 5.06 2.04 14.46 1.78 2.08 12.78 9.79 10.32 9.2 6.55 6.73 5.57 6.3
5.67 5.68 6.4 5.38 6.59 5.26 5.73 5.49 6.39 6.44 7.4 5.47 5.41 4.43 3.42 6.67 4.44 2.53 6.84 0.07 2.98 8.08 5.02 5.23 5.06 13.66 12.51 12.34 4.75 4.95 4.58 4.71
0.5 0.4 0.34 0.17 0.29 0.52 0.52 0.74 0.32 0.35 0.52 0.31 0.07 0.83 0.31 0.15 0.01 0.07 0.08 0.56 0.0 0.84 0.17 0.1 0.27 0.92 1.03 0.8 0.06 0.08 0.06 0.0
6.23 10.49 25.77 28.69 20.59 17.23 24.32 26.01 19.53 18.31 11.98 7.92 16.91 7.16 21.75 15.87 12.18 8.28 14.27 13.34 8.57 65.55 11.82 9.17 29.84 99.69 35.52 35.6 5.03 4.7 3.37 5.59
Smo427521 (MCM9)
 0.66 0.72 0.56 0.76 1.52 0.84 1.03 1.24 1.37 1.47 1.15 0.84 1.04 0.61 3.23 0.99 0.86 0.78 1.35 1.16 1.08 2.98 0.51 0.52 1.53 1.93 1.18 2.07 0.68 0.76 0.36 0.22
4.67 5.06 2.96 4.23 4.99 4.49 5.73 5.84 4.94 5.81 4.27 3.95 0.57 2.36 2.68 0.76 0.29 0.74 0.97 3.84 4.7 10.97 1.08 0.49 3.35 9.9 9.58 6.84 0.65 0.67 0.69 0.59
3.29 2.67 2.4 3.12 4.37 3.79 4.1 3.39 2.52 2.31 2.54 2.57 0.71 2.3 4.93 1.07 0.48 1.36 0.7 2.56 2.12 4.84 0.5 0.85 2.07 5.06 4.98 4.98 0.57 0.5 0.56 0.54
10.03 9.21 9.81 10.45 12.92 10.44 10.03 8.91 10.57 10.27 10.45 9.41 8.64 5.93 5.71 10.1 6.4 3.45 10.96 1.28 4.52 14.71 8.62 8.17 6.46 21.37 9.87 10.5 6.94 7.61 4.32 4.11
6.7 3.2 4.83 4.34 6.0 4.69 5.28 10.92 7.27 6.8 5.83 4.29 2.06 1.63 6.1 2.54 2.2 1.15 7.1 9.42 2.39 11.26 2.99 4.0 13.31 11.36 15.54 11.26 3.37 3.91 3.75 3.47
Smo437421 (CYCT1;4)
 25.27 25.76 25.71 25.79 30.63 33.81 31.73 39.26 32.76 32.89 32.32 28.31 28.14 25.23 47.26 35.31 19.11 16.24 37.81 26.48 35.57 66.6 25.05 24.95 45.21 62.37 40.79 45.65 28.51 27.29 20.89 24.26
Smo437525 (GAUT11)
 4.72 4.76 5.14 5.5 6.07 6.59 6.47 7.48 7.22 7.38 7.26 5.33 5.42 5.84 7.63 5.88 4.18 3.32 5.76 5.16 3.75 10.34 4.25 4.57 3.6 11.39 9.08 10.17 4.04 4.48 3.38 3.25
Smo438401 (NRPA1)
 19.19 17.13 17.38 19.35 22.18 19.84 23.98 25.39 25.77 24.76 23.29 19.51 20.74 16.39 32.86 24.69 14.17 9.41 27.99 30.79 11.52 61.25 17.29 18.92 5.95 46.24 46.43 43.22 18.35 19.56 17.72 21.41
46.35 51.22 57.37 49.97 54.99 56.59 55.13 66.39 59.03 57.01 59.56 50.46 63.63 96.22 81.7 63.95 47.11 40.57 62.59 44.36 25.71 84.04 49.74 54.26 35.97 64.24 51.56 46.82 49.59 51.43 36.62 40.25
10.94 8.4 8.5 9.12 12.8 12.27 13.77 18.82 17.69 23.0 21.46 24.72 12.54 9.45 33.94 13.12 6.77 3.79 12.57 10.39 3.84 11.04 8.42 10.74 17.63 34.42 19.92 19.39 7.83 9.02 5.88 6.04
Smo446044 (SR45)
 88.24 71.58 60.08 70.09 76.97 74.14 83.61 101.26 102.09 101.88 100.58 104.86 62.39 56.48 121.61 67.55 44.57 29.87 77.65 56.51 46.84 139.0 59.84 70.9 67.96 149.38 96.15 82.13 53.81 54.92 65.48 73.84
1.31 1.07 1.09 1.72 2.1 2.29 2.62 3.19 2.99 2.49 2.53 1.76 0.83 1.01 4.02 0.95 0.99 1.76 0.88 2.2 1.89 3.85 1.69 3.01 2.16 2.93 3.94 3.81 1.02 1.45 0.85 0.82
7.57 7.78 7.01 7.46 9.3 11.61 10.9 16.1 13.93 16.34 11.32 9.24 6.31 3.5 12.3 6.04 7.79 6.54 8.37 5.53 3.55 12.6 7.33 5.07 7.71 17.55 17.24 17.91 8.31 7.98 8.4 9.7
25.34 22.27 23.45 24.82 31.38 31.38 30.16 35.56 29.87 32.77 29.09 25.7 35.95 27.93 38.5 38.84 22.08 18.86 37.1 41.39 21.79 35.74 28.07 33.54 23.82 44.65 36.35 37.44 25.5 28.36 32.58 38.6
16.12 16.28 14.62 16.42 13.45 12.05 14.73 21.68 22.3 19.1 19.87 20.7 19.97 17.14 36.74 18.25 7.28 5.91 14.79 4.4 3.84 35.17 15.45 17.54 18.41 57.99 20.64 12.46 15.9 15.43 8.9 6.88
20.8 21.17 21.08 21.5 23.28 22.73 21.68 26.52 24.51 22.31 20.59 20.65 21.06 20.02 25.03 20.2 15.17 12.89 21.04 9.82 34.73 31.5 17.63 20.27 33.71 36.09 39.63 38.84 16.99 17.27 15.74 14.49
15.28 15.52 20.67 20.17 21.72 26.15 29.46 31.71 30.19 27.37 21.76 20.53 23.28 13.01 49.79 24.33 19.61 16.6 25.89 8.41 23.31 45.83 16.16 16.91 34.56 60.89 33.78 33.7 21.3 22.66 15.4 21.71
Smo90336 (DLS1)
 38.88 42.02 38.96 40.24 41.99 40.34 40.64 38.57 39.8 40.79 38.88 40.95 34.58 35.52 35.47 37.92 25.5 17.98 35.88 24.65 21.88 43.63 29.97 30.01 36.32 45.57 42.85 45.2 25.52 27.87 36.12 39.27
5.76 3.98 4.55 5.46 7.94 8.65 11.55 14.56 14.22 17.96 14.62 15.55 7.02 4.4 18.98 5.65 3.75 1.16 7.06 0.98 1.42 3.32 6.22 9.82 7.5 22.0 6.35 6.65 5.2 5.92 4.72 5.13
6.62 6.41 5.87 5.89 6.7 7.27 7.49 7.71 9.37 9.33 8.61 8.09 4.64 2.43 3.46 6.26 4.16 2.09 5.27 5.1 6.06 10.4 4.62 5.34 7.3 11.32 6.95 6.13 5.38 5.85 5.01 4.95
Smo94768 (ANN5)
 2.8 3.16 3.37 4.02 4.13 2.38 4.5 3.39 3.97 3.59 3.51 4.85 0.16 8.09 3.86 0.73 0.18 1.11 1.47 0.11 4.1 8.19 0.36 0.58 2.39 9.47 7.61 6.72 0.24 0.38 0.56 0.44
18.34 16.97 13.73 17.27 17.71 17.04 14.91 15.05 14.47 16.82 18.37 18.15 19.09 21.95 27.02 20.07 12.69 9.49 14.27 11.08 2.81 14.1 14.44 16.77 11.85 14.99 16.0 18.36 9.65 11.15 11.7 14.25

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)