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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Aerial tissue - Light - ZT1 | Aerial tissue - Light - ZT3 | Aerial tissue - Light - ZT5 | Aerial tissue - Light - ZT7 | Aerial tissue - Light - ZT9 | Aerial tissue - Light - ZT11 | Aerial tissue - Dark - ZT1 | Aerial tissue - Dark - ZT3 | Aerial tissue - Dark - ZT5 | Aerial tissue - Dark - ZT7 | Aerial tissue - Dark - ZT9 | Aerial tissue - Dark - ZT11 | Roots | Root elongation and differentiation zone | Root meristematic zone | Aerial roots and rhizophores | Shoot tips | Microphyll | Strobili | Shoot apical meristem - AC | Shoot apical meristem - Core | Shoot apical meristem - P1 | Stem - Top | Stem - Bottom | Whole plant | Aerial tissue - Stress - Dark | Aerial tissue - Stress - High light | Aerial tissue - Stress - Cont | Aerial tissue - Stress - 37C 1h | Aerial tissue - Stress - 37C 3h | Aerial tissue - Stress - 4C 1h | Aerial tissue - Stress - 4C 3h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Smo109804 (PERK1) | 0.79 | 0.65 | 0.25 | 0.87 | 0.29 | 0.69 | -0.48 | 0.59 | 1.15 | 1.06 | 0.91 | 0.87 | - | - | -7.08 | -4.08 | -1.03 | -0.33 | 0.47 | - | -3.26 | -2.19 | -1.78 | -2.44 | -0.56 | 1.41 | 0.96 | 0.3 | -1.0 | -1.62 | 0.09 | -0.61 |
| 0.72 | 0.58 | 0.09 | -0.0 | -0.47 | -0.46 | -0.37 | -0.22 | -0.52 | 0.06 | -0.25 | -0.04 | -0.88 | 1.5 | 0.39 | 0.72 | 0.2 | -2.47 | 0.81 | -5.75 | -4.89 | - | 0.21 | 0.04 | -1.15 | -0.03 | -0.06 | 0.24 | 0.26 | 0.38 | 0.76 | -0.42 | |
| 1.47 | - | - | - | - | - | - | - | - | - | - | 3.02 | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.4 | - | - | - | - | - | - | |
Smo115388 (GLIP7) | 0.39 | 0.39 | -0.57 | -1.62 | -1.12 | -0.86 | -0.88 | -0.45 | -0.38 | -0.42 | -0.5 | -0.64 | -7.81 | - | - | -5.71 | 1.5 | -0.05 | 0.35 | - | -5.68 | - | 2.31 | 0.75 | -0.27 | -0.73 | -7.56 | -4.74 | 2.0 | 0.92 | 1.75 | -0.39 |
| - | -3.45 | 0.87 | 0.35 | -1.34 | 0.79 | 0.79 | -15.43 | 1.33 | -0.8 | 0.2 | - | - | -6.36 | 2.7 | - | -1.23 | - | - | - | 2.46 | - | -3.81 | -1.95 | 1.95 | 0.64 | 0.8 | - | - | - | -0.4 | - | |
| - | -3.45 | 0.87 | 0.35 | -1.34 | 0.79 | 0.79 | -15.43 | 1.33 | -0.8 | 0.2 | - | - | -6.36 | 2.7 | - | -1.23 | - | - | - | 2.46 | - | -3.81 | -1.95 | 1.95 | 0.64 | 0.8 | - | - | - | -0.4 | - | |
| - | -3.45 | 0.87 | 0.35 | -1.34 | 0.79 | 0.79 | -15.43 | 1.33 | -0.8 | 0.2 | - | - | -6.36 | 2.7 | - | -1.23 | - | - | - | 2.46 | - | -3.81 | -1.95 | 1.95 | 0.64 | 0.8 | - | - | - | -0.4 | - | |
| - | -3.45 | 0.87 | 0.35 | -1.34 | 0.79 | 0.79 | -15.43 | 1.33 | -0.8 | 0.2 | - | - | -6.36 | 2.7 | - | -1.23 | - | - | - | 2.46 | - | -3.81 | -1.95 | 1.95 | 0.64 | 0.8 | - | - | - | -0.4 | - | |
| - | -3.45 | 0.87 | 0.35 | -1.34 | 0.79 | 0.79 | -15.43 | 1.33 | -0.8 | 0.2 | - | - | -6.36 | 2.7 | - | -1.23 | - | - | - | 2.46 | - | -3.81 | -1.95 | 1.95 | 0.64 | 0.8 | - | - | - | -0.4 | - | |
| - | - | - | - | - | 3.52 | - | - | - | - | - | - | - | - | - | - | 2.93 | - | 3.69 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -1.1 | -0.12 | 0.72 | 1.43 | 0.59 | 0.18 | 0.56 | 2.33 | 1.36 | -0.17 | 0.71 | 1.0 | - | - | - | -0.62 | - | 1.61 | -0.59 | - | - | - | - | - | - | 0.2 | 2.18 | - | - | - | - | - | |
| 0.0 | 0.03 | -0.01 | -0.48 | -1.62 | -0.29 | -0.5 | 0.51 | 0.35 | 0.61 | 0.26 | 0.09 | -1.54 | -2.03 | - | -0.86 | -0.75 | -0.51 | -0.06 | -1.04 | 0.09 | - | 0.18 | 1.12 | 1.82 | 1.88 | -0.1 | -0.02 | -0.76 | -0.8 | -0.22 | -1.0 | |
| -0.02 | 0.05 | 0.14 | 0.05 | -0.16 | 0.03 | -0.17 | -0.05 | 0.1 | -0.01 | 0.03 | -0.18 | -2.88 | -1.6 | -0.29 | -1.91 | 0.49 | -0.25 | 0.62 | -1.34 | -2.06 | -0.84 | 0.66 | 0.24 | 0.32 | 0.83 | 0.11 | 0.06 | 0.77 | 0.68 | 0.42 | 0.01 | |
| 0.5 | 0.08 | -0.42 | -0.81 | -0.76 | -0.94 | -1.14 | -0.2 | -0.08 | 0.34 | 0.47 | 0.54 | 0.65 | 0.34 | -0.67 | -0.09 | -0.14 | -0.19 | 0.76 | -3.75 | -0.92 | -2.08 | -0.13 | -0.06 | -1.76 | 1.49 | -0.59 | -1.42 | 0.47 | 0.29 | 0.48 | 0.98 | |
Smo173133 (4CL3) | -0.18 | -0.66 | 0.35 | 1.13 | 1.77 | 1.42 | 0.29 | -0.71 | 0.18 | 0.03 | -0.29 | -0.2 | -1.39 | -0.8 | -1.0 | 0.92 | -0.25 | -0.17 | 2.33 | -3.35 | -3.9 | -2.99 | -2.29 | -1.35 | -1.17 | 0.41 | -1.77 | -1.63 | -0.49 | -0.82 | -1.53 | -2.01 |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 5.0 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
Smo229863 (KUP11) | 0.44 | -0.6 | -0.33 | 0.0 | 0.09 | -0.2 | 0.34 | 0.73 | 0.3 | 0.89 | 0.44 | 0.08 | -0.4 | 0.3 | -0.71 | -0.46 | -0.03 | -1.18 | 0.78 | -4.64 | -1.01 | -4.84 | 0.03 | -0.21 | -0.44 | -0.14 | -0.88 | -0.67 | 0.48 | 0.41 | 1.08 | 0.32 |
Smo229868 (OPT4) | 0.06 | 0.23 | 0.28 | 0.37 | 0.43 | 0.28 | 0.11 | 0.07 | 0.32 | 0.25 | 0.2 | 0.11 | -1.97 | -3.1 | -2.15 | -0.28 | -0.21 | -0.92 | 1.11 | -1.24 | -1.73 | -4.63 | 1.23 | 1.25 | -0.08 | 1.24 | -0.73 | -0.4 | -0.13 | -0.39 | -0.57 | -1.13 |
| -1.42 | -1.21 | -3.05 | -3.04 | -2.18 | -2.13 | -3.78 | -1.23 | -2.87 | -4.05 | -1.77 | -2.52 | -2.44 | 1.19 | -2.81 | -1.95 | 0.45 | 1.48 | 0.26 | 1.9 | 1.87 | - | 0.67 | 0.28 | 2.61 | 0.0 | -0.24 | -4.5 | 0.1 | -0.85 | -0.22 | -1.24 | |
| -0.73 | -0.07 | 0.55 | 0.54 | 0.32 | -0.01 | 1.08 | 0.57 | 0.21 | 0.3 | -0.47 | -0.78 | -1.45 | 0.23 | -1.86 | -0.16 | 0.63 | -0.86 | -1.39 | -4.18 | -1.14 | -7.1 | 0.33 | 0.14 | 1.09 | 0.42 | -0.18 | -0.26 | -0.25 | -0.58 | 1.06 | 0.2 | |
| -0.24 | 0.01 | 0.47 | 0.48 | 0.12 | -0.07 | 1.14 | 0.8 | 0.31 | 0.45 | -0.04 | -0.18 | -2.83 | 0.72 | -1.39 | -0.15 | 0.6 | 0.06 | -1.19 | -6.03 | -0.88 | -8.22 | -0.12 | -0.58 | -0.07 | 0.55 | -0.83 | -0.34 | -0.01 | -0.28 | 0.99 | 0.17 | |
| 0.38 | 0.18 | -0.05 | - | - | 0.4 | - | - | - | - | - | 1.23 | -0.92 | - | - | - | 1.58 | - | 1.55 | - | - | - | 2.77 | - | - | 1.34 | - | - | 2.13 | 1.66 | 0.69 | - | |
| 2.62 | - | - | - | 2.71 | - | - | - | - | - | - | - | - | 3.04 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.51 | - | 2.43 | |
Smo402768 (PNG1) | -2.59 | -0.93 | -0.83 | 0.44 | 0.57 | -0.24 | 0.06 | 0.7 | -3.72 | -1.92 | -3.2 | -2.11 | -0.87 | -0.97 | 1.12 | 0.9 | -0.67 | -3.38 | -1.05 | -0.52 | - | - | 0.39 | 1.72 | 1.31 | 2.44 | 0.53 | -1.11 | 0.15 | -0.73 | -1.34 | -2.32 |
| 0.32 | 1.65 | -0.8 | -0.95 | -1.03 | -3.35 | -3.52 | - | -0.17 | -2.81 | - | -1.54 | 1.11 | 2.72 | 1.55 | 2.34 | 0.03 | -2.79 | 0.22 | - | - | - | -1.48 | -0.66 | -1.35 | -0.32 | - | - | -1.95 | -0.87 | 1.11 | -1.96 | |
| - | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - | 0.57 | 0.55 | - | 0.42 | 0.68 | 3.39 | - | - | - | 2.55 | - | 2.9 | - | 0.36 | - | - | - | |
| - | - | - | - | - | - | - | 1.89 | - | 2.07 | - | - | - | 2.19 | 3.24 | - | - | - | - | 3.34 | - | - | - | - | - | - | - | - | - | - | - | - | |
| 0.19 | 1.22 | -0.3 | - | 1.15 | - | - | - | - | - | -0.09 | -0.27 | - | 0.73 | 0.16 | - | -0.1 | 0.34 | -1.16 | - | - | 2.07 | -0.22 | 1.17 | - | 1.56 | - | 2.46 | -1.33 | -0.16 | -0.21 | -1.28 | |
Smo41460 (ERD4) | 0.12 | -0.05 | -0.02 | -0.21 | -0.24 | -0.32 | 0.03 | 0.03 | 0.24 | 0.43 | 0.28 | 0.09 | -0.6 | -0.29 | -1.61 | 0.57 | 0.24 | -0.07 | 0.2 | -1.52 | -1.67 | -2.73 | 0.11 | -0.01 | -1.95 | 0.09 | -0.44 | -0.63 | 0.3 | 0.47 | 1.54 | 0.94 |
| - | - | - | 1.36 | - | - | - | - | - | - | - | - | - | 2.65 | - | - | - | - | - | - | - | - | - | - | 3.93 | 2.99 | - | - | - | - | - | - | |
| 0.04 | - | -2.17 | -1.06 | 0.14 | - | -1.9 | -1.2 | 1.67 | - | - | -0.33 | - | - | - | -1.68 | -0.84 | 0.14 | 1.48 | - | - | - | -0.31 | -1.78 | 3.86 | 0.84 | -0.57 | 0.44 | - | -1.82 | - | - | |
| - | - | - | - | - | - | 3.74 | - | - | 4.22 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -0.54 | -0.34 | 0.34 | 0.02 | -2.1 | -0.16 | -0.36 | -2.34 | -0.55 | -1.0 | -1.64 | -0.63 | -4.61 | 0.81 | -5.09 | -2.16 | -0.33 | 1.68 | 0.4 | - | 0.09 | -3.94 | -0.27 | -0.97 | 1.0 | 0.66 | -0.74 | -1.36 | 1.59 | 0.77 | 1.87 | 0.32 | |
Smo424516 (UBP12) | 4.34 | -7.69 | -0.34 | -4.53 | -6.37 | -5.16 | -4.23 | -6.66 | -0.52 | 2.17 | -3.7 | -1.73 | -6.37 | 1.21 | -5.27 | 0.83 | - | - | -2.34 | - | - | - | - | - | - | -0.82 | -5.65 | -1.62 | - | - | - | - |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.93 | - | - | - | - | - | 4.07 | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | 3.93 | - | - | - | - | - | - | - | - | - | 4.07 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | 1.32 | - | - | - | - | - | - | - | - | -0.55 | - | -0.36 | -0.51 | -0.71 | 1.84 | 1.29 | 2.18 | 2.87 | - | - | - | 2.82 | - | - | - | - | 0.29 | - | -0.78 | |
| 0.63 | - | - | - | - | - | - | 3.13 | - | 1.13 | - | - | - | - | - | - | 3.29 | - | 2.36 | - | - | - | 2.21 | - | - | - | - | - | - | - | - | - | |
| -0.97 | -2.34 | -2.79 | -2.51 | -1.92 | -2.25 | -3.57 | -1.63 | -1.49 | -0.13 | -1.46 | -0.38 | -0.24 | -2.18 | -2.53 | 0.57 | 0.29 | 1.91 | 0.81 | 0.18 | -0.26 | -3.42 | -0.14 | 0.76 | 2.25 | -0.32 | -1.76 | -0.9 | 1.32 | 0.89 | 0.63 | 0.35 | |
Smo444039 (FaTA) | -0.03 | -0.54 | -0.46 | -0.5 | -0.51 | -0.56 | -0.73 | -0.39 | -0.15 | -0.02 | 0.24 | 0.2 | 0.23 | 0.54 | 0.76 | 0.52 | -0.34 | -2.19 | 0.57 | -0.94 | -2.11 | -5.33 | -0.1 | -0.04 | 0.03 | 1.56 | 0.74 | 0.62 | -0.57 | -0.42 | 0.08 | 0.44 |
| 0.15 | 0.32 | 0.48 | 0.23 | 0.1 | -0.24 | 0.93 | 0.7 | 0.24 | 0.4 | -0.27 | -0.4 | -2.95 | -2.48 | -4.76 | -1.8 | 0.17 | -0.54 | -1.08 | -7.89 | -1.77 | -8.55 | 0.32 | 0.37 | 0.81 | 1.18 | -0.23 | -0.13 | 0.07 | -0.15 | 1.41 | 0.48 | |
| 0.0 | -0.35 | -1.23 | -1.79 | -1.35 | -1.53 | -1.81 | -1.69 | -2.5 | -1.31 | -1.99 | -2.01 | 1.26 | 1.47 | -2.97 | 1.63 | -1.42 | 0.11 | 0.68 | - | 0.34 | -6.83 | -0.4 | -0.36 | 0.46 | 0.97 | 1.73 | 0.08 | 0.26 | -0.34 | 1.15 | -0.13 | |
| - | - | - | - | - | - | - | - | - | - | - | - | 2.79 | 2.89 | - | 2.97 | - | - | 3.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| -0.37 | -0.16 | -0.6 | -0.07 | 0.04 | 0.26 | 0.42 | 0.47 | 0.69 | 0.78 | 0.4 | 0.01 | -4.06 | -2.8 | -1.77 | -1.68 | -0.6 | -2.63 | -1.11 | 1.68 | 1.59 | -3.7 | -1.07 | -1.42 | 1.0 | 0.84 | 0.52 | 0.52 | -0.91 | -1.01 | -0.75 | -0.69 | |
Smo78325 (LAX3) | -0.03 | -0.45 | -0.31 | -0.11 | -0.29 | -0.31 | 0.17 | 0.44 | 0.58 | 0.56 | 0.61 | 0.41 | 0.02 | -0.06 | -5.14 | -0.6 | 0.03 | -0.49 | -0.03 | -1.12 | 1.02 | 0.48 | -1.24 | -1.82 | -0.53 | 0.95 | -0.5 | -0.6 | 0.23 | 0.2 | 0.24 | 0.22 |
| 0.04 | -0.3 | -0.33 | -0.12 | -0.18 | 0.09 | 0.33 | 0.16 | 0.22 | 0.59 | 0.25 | -0.09 | -0.66 | -0.14 | -0.5 | -0.32 | -0.41 | -0.17 | 0.99 | -0.66 | 0.19 | -0.05 | -0.19 | 0.37 | -0.39 | 0.91 | 0.14 | -0.09 | -0.37 | -0.5 | -0.12 | -0.61 | |
| -0.64 | 0.26 | -0.43 | -0.33 | 0.01 | -0.03 | -0.33 | 0.52 | 0.37 | -0.9 | 0.68 | -0.33 | 0.03 | -2.15 | -2.22 | -0.47 | -0.6 | 0.22 | 1.18 | 0.62 | 0.63 | -3.92 | -0.9 | -0.2 | -0.63 | 0.62 | 0.77 | -0.7 | 0.24 | -0.16 | 0.69 | 0.21 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.