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Gene | Aerial tissue - Light - ZT1 | Aerial tissue - Light - ZT3 | Aerial tissue - Light - ZT5 | Aerial tissue - Light - ZT7 | Aerial tissue - Light - ZT9 | Aerial tissue - Light - ZT11 | Aerial tissue - Dark - ZT1 | Aerial tissue - Dark - ZT3 | Aerial tissue - Dark - ZT5 | Aerial tissue - Dark - ZT7 | Aerial tissue - Dark - ZT9 | Aerial tissue - Dark - ZT11 | Roots | Root elongation and differentiation zone | Root meristematic zone | Aerial roots and rhizophores | Shoot tips | Microphyll | Strobili | Shoot apical meristem - AC | Shoot apical meristem - Core | Shoot apical meristem - P1 | Stem - Top | Stem - Bottom | Whole plant | Aerial tissue - Stress - Dark | Aerial tissue - Stress - High light | Aerial tissue - Stress - Cont | Aerial tissue - Stress - 37C 1h | Aerial tissue - Stress - 37C 3h | Aerial tissue - Stress - 4C 1h | Aerial tissue - Stress - 4C 3h |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Smo109804 (PERK1) | 3.21 | 2.92 | 2.22 | 3.4 | 2.27 | 3.01 | 1.33 | 2.79 | 4.13 | 3.87 | 3.5 | 3.4 | 0.0 | 0.0 | 0.01 | 0.11 | 0.91 | 1.48 | 2.57 | 0.0 | 0.19 | 0.41 | 0.54 | 0.34 | 1.26 | 4.95 | 3.62 | 2.3 | 0.93 | 0.6 | 1.98 | 1.22 |
22.82 | 20.67 | 14.74 | 13.83 | 10.05 | 10.1 | 10.73 | 11.93 | 9.7 | 14.49 | 11.7 | 13.54 | 7.53 | 39.1 | 18.21 | 22.92 | 15.98 | 2.5 | 24.25 | 0.26 | 0.47 | 0.0 | 16.07 | 14.25 | 6.25 | 13.55 | 13.27 | 16.37 | 16.65 | 18.09 | 23.44 | 10.39 | |
0.02 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.12 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
Smo115388 (GLIP7) | 13.65 | 13.69 | 7.01 | 3.38 | 4.79 | 5.74 | 5.65 | 7.64 | 8.03 | 7.79 | 7.38 | 6.7 | 0.05 | 0.0 | 0.0 | 0.2 | 29.45 | 10.08 | 13.25 | 0.0 | 0.2 | 0.0 | 51.57 | 17.53 | 8.66 | 6.28 | 0.06 | 0.39 | 41.83 | 19.71 | 35.11 | 7.96 |
0.0 | 0.04 | 0.81 | 0.56 | 0.17 | 0.76 | 0.76 | 0.0 | 1.11 | 0.25 | 0.51 | 0.0 | 0.0 | 0.01 | 2.88 | 0.0 | 0.19 | 0.0 | 0.0 | 0.0 | 2.43 | 0.0 | 0.03 | 0.11 | 1.71 | 0.69 | 0.77 | 0.0 | 0.0 | 0.0 | 0.34 | 0.0 | |
0.0 | 0.04 | 0.81 | 0.56 | 0.17 | 0.76 | 0.76 | 0.0 | 1.11 | 0.25 | 0.51 | 0.0 | 0.0 | 0.01 | 2.88 | 0.0 | 0.19 | 0.0 | 0.0 | 0.0 | 2.43 | 0.0 | 0.03 | 0.11 | 1.71 | 0.69 | 0.77 | 0.0 | 0.0 | 0.0 | 0.34 | 0.0 | |
0.0 | 0.04 | 0.81 | 0.56 | 0.17 | 0.76 | 0.76 | 0.0 | 1.11 | 0.25 | 0.51 | 0.0 | 0.0 | 0.01 | 2.88 | 0.0 | 0.19 | 0.0 | 0.0 | 0.0 | 2.43 | 0.0 | 0.03 | 0.11 | 1.71 | 0.69 | 0.77 | 0.0 | 0.0 | 0.0 | 0.34 | 0.0 | |
0.0 | 0.04 | 0.81 | 0.56 | 0.17 | 0.76 | 0.76 | 0.0 | 1.11 | 0.25 | 0.51 | 0.0 | 0.0 | 0.01 | 2.88 | 0.0 | 0.19 | 0.0 | 0.0 | 0.0 | 2.43 | 0.0 | 0.03 | 0.11 | 1.71 | 0.69 | 0.77 | 0.0 | 0.0 | 0.0 | 0.34 | 0.0 | |
0.0 | 0.04 | 0.81 | 0.56 | 0.17 | 0.76 | 0.76 | 0.0 | 1.11 | 0.25 | 0.51 | 0.0 | 0.0 | 0.01 | 2.88 | 0.0 | 0.19 | 0.0 | 0.0 | 0.0 | 2.43 | 0.0 | 0.03 | 0.11 | 1.71 | 0.69 | 0.77 | 0.0 | 0.0 | 0.0 | 0.34 | 0.0 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
0.04 | 0.08 | 0.15 | 0.25 | 0.14 | 0.1 | 0.14 | 0.46 | 0.24 | 0.08 | 0.15 | 0.18 | 0.0 | 0.0 | 0.0 | 0.06 | 0.0 | 0.28 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.11 | 0.42 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
1.99 | 2.03 | 1.97 | 1.43 | 0.65 | 1.63 | 1.4 | 2.83 | 2.53 | 3.04 | 2.38 | 2.12 | 0.68 | 0.49 | 0.0 | 1.09 | 1.18 | 1.39 | 1.91 | 0.97 | 2.12 | 0.0 | 2.25 | 4.33 | 7.02 | 7.33 | 1.85 | 1.96 | 1.18 | 1.14 | 1.71 | 0.99 | |
17.05 | 17.92 | 19.0 | 17.85 | 15.44 | 17.65 | 15.36 | 16.73 | 18.52 | 17.12 | 17.57 | 15.27 | 2.35 | 5.7 | 14.08 | 4.58 | 24.24 | 14.51 | 26.47 | 6.8 | 4.13 | 9.65 | 27.34 | 20.35 | 21.57 | 30.67 | 18.63 | 17.96 | 29.48 | 27.71 | 23.11 | 17.42 | |
152.91 | 114.28 | 80.73 | 61.88 | 63.81 | 56.35 | 49.04 | 94.25 | 102.34 | 137.32 | 149.84 | 157.57 | 170.19 | 137.49 | 67.89 | 101.84 | 98.1 | 95.1 | 183.02 | 8.03 | 57.13 | 25.53 | 98.86 | 104.07 | 31.85 | 305.09 | 71.83 | 40.59 | 149.89 | 132.73 | 150.81 | 213.75 | |
Smo173133 (4CL3) | 1.32 | 0.94 | 1.91 | 3.28 | 5.1 | 4.0 | 1.82 | 0.91 | 1.69 | 1.53 | 1.22 | 1.3 | 0.57 | 0.86 | 0.75 | 2.83 | 1.26 | 1.33 | 7.52 | 0.15 | 0.1 | 0.19 | 0.3 | 0.59 | 0.66 | 1.99 | 0.44 | 0.48 | 1.07 | 0.85 | 0.52 | 0.37 |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
Smo229863 (KUP11) | 20.95 | 10.19 | 12.23 | 15.45 | 16.38 | 13.44 | 19.49 | 25.57 | 19.0 | 28.55 | 20.9 | 16.34 | 11.65 | 19.0 | 9.43 | 11.2 | 15.1 | 6.79 | 26.51 | 0.62 | 7.68 | 0.54 | 15.76 | 13.37 | 11.39 | 13.97 | 8.38 | 9.67 | 21.54 | 20.43 | 32.68 | 19.31 |
Smo229868 (OPT4) | 21.75 | 24.58 | 25.39 | 27.0 | 28.25 | 25.46 | 22.58 | 22.04 | 26.13 | 24.82 | 24.0 | 22.65 | 5.34 | 2.44 | 4.71 | 17.24 | 18.05 | 11.06 | 45.07 | 8.88 | 6.31 | 0.84 | 48.95 | 49.61 | 19.74 | 49.55 | 12.58 | 15.83 | 19.07 | 15.95 | 14.1 | 9.56 |
1.51 | 1.75 | 0.49 | 0.49 | 0.89 | 0.92 | 0.29 | 1.73 | 0.55 | 0.24 | 1.19 | 0.71 | 0.75 | 9.26 | 0.58 | 1.05 | 5.53 | 11.31 | 4.87 | 15.09 | 14.83 | 0.0 | 6.46 | 4.92 | 24.78 | 4.06 | 3.44 | 0.18 | 4.35 | 2.26 | 3.47 | 1.71 | |
110.47 | 174.93 | 267.53 | 267.07 | 228.36 | 181.4 | 386.62 | 271.79 | 212.3 | 225.03 | 132.41 | 106.85 | 66.98 | 215.11 | 50.42 | 163.61 | 283.14 | 101.19 | 70.01 | 10.08 | 83.25 | 1.34 | 230.72 | 202.01 | 391.17 | 245.01 | 162.05 | 153.14 | 153.87 | 122.23 | 381.61 | 210.8 | |
99.02 | 117.46 | 161.75 | 162.83 | 126.98 | 111.32 | 257.61 | 204.14 | 144.97 | 159.41 | 113.64 | 103.22 | 16.43 | 192.87 | 44.58 | 105.54 | 177.46 | 121.51 | 51.12 | 1.79 | 63.28 | 0.39 | 107.45 | 78.05 | 111.04 | 171.16 | 65.77 | 92.17 | 116.28 | 96.42 | 232.48 | 131.35 | |
0.72 | 0.63 | 0.54 | 0.0 | 0.0 | 0.73 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.3 | 0.29 | 0.0 | 0.0 | 0.0 | 1.66 | 0.0 | 1.63 | 0.0 | 0.0 | 0.0 | 3.79 | 0.0 | 0.0 | 1.4 | 0.0 | 0.0 | 2.43 | 1.75 | 0.9 | 0.0 | |
0.1 | 0.0 | 0.0 | 0.0 | 0.11 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.09 | 0.0 | 0.09 | |
Smo402768 (PNG1) | 0.11 | 0.35 | 0.38 | 0.91 | 0.99 | 0.57 | 0.7 | 1.09 | 0.05 | 0.18 | 0.07 | 0.15 | 0.36 | 0.34 | 1.46 | 1.25 | 0.42 | 0.06 | 0.32 | 0.47 | 0.0 | 0.0 | 0.88 | 2.2 | 1.65 | 3.62 | 0.96 | 0.31 | 0.74 | 0.4 | 0.26 | 0.13 |
0.79 | 1.98 | 0.36 | 0.32 | 0.31 | 0.06 | 0.05 | 0.0 | 0.56 | 0.09 | 0.0 | 0.22 | 1.36 | 4.14 | 1.84 | 3.19 | 0.64 | 0.09 | 0.73 | 0.0 | 0.0 | 0.0 | 0.23 | 0.4 | 0.25 | 0.5 | 0.0 | 0.0 | 0.16 | 0.34 | 1.35 | 0.16 | |
0.0 | 0.0 | 0.05 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.06 | 0.06 | 0.0 | 0.06 | 0.07 | 0.45 | 0.0 | 0.0 | 0.0 | 0.25 | 0.0 | 0.32 | 0.0 | 0.06 | 0.0 | 0.0 | 0.0 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.02 | 0.0 | 0.03 | 0.0 | 0.0 | 0.0 | 0.03 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
0.04 | 0.09 | 0.03 | 0.0 | 0.09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.03 | 0.0 | 0.06 | 0.04 | 0.0 | 0.04 | 0.05 | 0.02 | 0.0 | 0.0 | 0.16 | 0.03 | 0.09 | 0.0 | 0.11 | 0.0 | 0.21 | 0.02 | 0.03 | 0.03 | 0.02 | |
Smo41460 (ERD4) | 68.34 | 60.96 | 62.04 | 54.55 | 53.28 | 50.69 | 64.32 | 64.29 | 74.71 | 85.24 | 76.76 | 67.04 | 41.76 | 51.6 | 20.64 | 93.9 | 74.27 | 59.9 | 72.47 | 21.93 | 19.87 | 9.5 | 67.94 | 62.65 | 16.34 | 67.11 | 46.53 | 40.67 | 77.54 | 87.47 | 183.83 | 120.78 |
0.0 | 0.0 | 0.0 | 0.03 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.19 | 0.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
0.18 | 0.0 | 0.04 | 0.08 | 0.19 | 0.0 | 0.05 | 0.08 | 0.56 | 0.0 | 0.0 | 0.14 | 0.0 | 0.0 | 0.0 | 0.05 | 0.1 | 0.19 | 0.49 | 0.0 | 0.0 | 0.0 | 0.14 | 0.05 | 2.55 | 0.31 | 0.12 | 0.24 | 0.0 | 0.05 | 0.0 | 0.0 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.03 | 0.0 | 0.0 | 0.05 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
3.14 | 3.61 | 5.75 | 4.63 | 1.06 | 4.07 | 3.54 | 0.9 | 3.11 | 2.28 | 1.46 | 2.93 | 0.19 | 7.97 | 0.13 | 1.02 | 3.62 | 14.54 | 6.0 | 0.0 | 4.86 | 0.3 | 3.79 | 2.32 | 9.08 | 7.21 | 2.72 | 1.78 | 13.7 | 7.74 | 16.59 | 5.69 | |
Smo424516 (UBP12) | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
0.0 | 0.0 | 0.0 | 0.36 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | 0.0 | 0.11 | 0.1 | 0.09 | 0.52 | 0.36 | 0.66 | 1.07 | 0.0 | 0.0 | 0.0 | 1.03 | 0.0 | 0.0 | 0.0 | 0.0 | 0.18 | 0.0 | 0.08 | |
0.01 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.07 | 0.0 | 0.02 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.08 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
3.51 | 1.36 | 1.0 | 1.21 | 1.83 | 1.45 | 0.58 | 2.23 | 2.46 | 6.31 | 2.49 | 5.29 | 5.82 | 1.52 | 1.19 | 10.22 | 8.4 | 25.89 | 12.06 | 7.78 | 5.77 | 0.64 | 6.24 | 11.63 | 32.78 | 5.52 | 2.03 | 3.7 | 17.25 | 12.74 | 10.66 | 8.8 | |
Smo444039 (FaTA) | 15.81 | 11.11 | 11.75 | 11.47 | 11.35 | 10.95 | 9.77 | 12.36 | 14.61 | 15.97 | 19.05 | 18.6 | 18.92 | 23.53 | 27.44 | 23.12 | 12.76 | 3.55 | 23.94 | 8.41 | 3.76 | 0.4 | 15.06 | 15.7 | 16.49 | 47.73 | 27.08 | 24.84 | 10.93 | 12.1 | 17.11 | 22.0 |
693.32 | 780.16 | 867.58 | 732.34 | 668.38 | 529.74 | 1186.84 | 1011.81 | 735.96 | 822.85 | 518.54 | 473.61 | 80.78 | 112.12 | 23.04 | 178.82 | 701.53 | 430.15 | 295.15 | 2.63 | 182.53 | 1.67 | 776.14 | 807.02 | 1094.61 | 1416.05 | 532.52 | 570.12 | 653.97 | 562.02 | 1653.62 | 869.13 | |
63.7 | 49.8 | 27.08 | 18.42 | 24.9 | 22.07 | 18.09 | 19.67 | 11.24 | 25.59 | 16.04 | 15.77 | 152.8 | 175.83 | 8.14 | 196.49 | 23.8 | 68.88 | 101.8 | 0.0 | 80.29 | 0.56 | 48.24 | 49.47 | 87.58 | 124.69 | 211.47 | 67.49 | 76.44 | 50.32 | 141.48 | 58.28 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.04 | 0.04 | 0.0 | 0.05 | 0.0 | 0.0 | 0.06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
4.29 | 4.96 | 3.67 | 5.27 | 5.71 | 6.66 | 7.44 | 7.71 | 8.93 | 9.5 | 7.32 | 5.6 | 0.33 | 0.8 | 1.63 | 1.73 | 3.66 | 0.89 | 2.57 | 17.74 | 16.67 | 0.43 | 2.64 | 2.07 | 11.11 | 9.95 | 7.93 | 7.95 | 2.96 | 2.77 | 3.3 | 3.43 | |
Smo78325 (LAX3) | 43.08 | 32.36 | 35.61 | 40.94 | 36.03 | 35.6 | 49.64 | 59.83 | 65.98 | 64.92 | 67.2 | 58.6 | 44.61 | 42.27 | 1.25 | 29.01 | 44.96 | 31.33 | 43.25 | 20.26 | 89.38 | 61.49 | 18.73 | 12.47 | 30.52 | 85.02 | 31.17 | 29.18 | 51.86 | 50.63 | 52.04 | 51.35 |
19.25 | 15.25 | 14.87 | 17.26 | 16.56 | 19.99 | 23.64 | 20.95 | 21.86 | 28.24 | 22.26 | 17.66 | 11.87 | 17.0 | 13.27 | 15.0 | 14.09 | 16.7 | 37.26 | 11.86 | 21.43 | 18.11 | 16.43 | 24.23 | 14.28 | 35.14 | 20.73 | 17.67 | 14.53 | 13.28 | 17.24 | 12.27 | |
1.83 | 3.41 | 2.12 | 2.26 | 2.87 | 2.78 | 2.27 | 4.08 | 3.69 | 1.53 | 4.57 | 2.27 | 2.91 | 0.64 | 0.61 | 2.05 | 1.87 | 3.31 | 6.46 | 4.38 | 4.41 | 0.19 | 1.53 | 2.48 | 1.84 | 4.38 | 4.84 | 1.75 | 3.36 | 2.55 | 4.59 | 3.3 |
Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)