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Heatmap: Cluster_3 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - - - - - - 0.59 - - - 0.54 1.46 3.95 - 0.17 - - 0.27 - 1.33 - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - 2.59 - 4.32 - - - - - - - - - -
- -6.82 - - - - - - - - -6.47 - - - -6.49 4.7 -4.76 - - -6.72 -7.34 - - - - -
- - - - -0.07 -1.63 -0.09 -1.51 - - - 1.73 0.94 -2.12 0.96 3.17 -1.56 -0.51 0.34 -0.27 - -0.93 1.26 -0.93 -1.15 -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - 1.07 - - - - - - 3.51 - 2.68 - 2.62 - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.58 0.66 -0.9 - - - - - - - -
-0.56 -0.41 -0.19 0.38 0.19 0.75 1.23 0.67 0.91 0.23 0.06 -0.48 -0.84 0.18 -0.89 1.88 -2.01 -0.88 -1.09 -1.04 -2.11 -1.19 -1.05 -1.05 -0.22 -0.56
- - - - 0.76 - 0.58 - - - 1.25 0.1 - - - 3.85 0.77 1.7 - - - - - - - -
- - - - - - - - - - - - - - - 4.49 - - 1.83 - - - - - - -
-1.93 - - - - - - - - - - - - - - 4.67 - - - -1.44 - - - - - -
- - - - - - - - - - - - - - -1.83 4.66 - - -2.1 - - - -2.12 - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
2.58 2.03 - - - - - - - - 2.38 - - - - 3.43 - - - - - - - - - -
- 2.16 - - - - - - - - - - - - - 4.43 - - - - - - - - - -
- - - - 1.35 - - - - - - - 1.85 - - 3.07 - - - 2.37 1.51 - - - 1.78 -
- 1.02 - - - - - 2.23 - -0.23 - - -0.22 - -0.2 3.61 1.09 - - 0.8 - - - - -0.73 -
- - - - - 0.91 - - - - - - - 0.31 1.8 3.36 - - 2.43 - 1.92 - - - - -
0.99 - - - - - 1.21 - 1.13 - - 1.09 - 0.84 0.91 3.47 - 0.41 - - - - - - 0.39 -
- - - - - - 0.83 - - - 0.79 0.91 - - - 3.84 - 1.82 - 0.74 - - - - 0.15 -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
-1.15 -0.89 -0.52 -0.34 -0.27 -0.63 -1.09 -1.29 -0.53 0.51 0.88 0.83 -0.17 -1.31 0.51 2.38 -0.27 -1.87 -3.25 -2.29 -3.98 0.16 -3.79 0.84 0.7 0.52
- 0.43 0.29 - 1.78 - - - - 0.21 - - - - - 2.27 - 0.65 1.22 - 0.91 - 1.32 - 1.96 0.87
- - - - - - - - - - - - - - - 4.32 - 2.59 - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
-1.18 -0.27 -0.25 -0.34 -0.15 -0.4 0.11 -0.54 -0.75 -0.61 -0.45 -0.67 -1.29 -0.09 0.36 2.44 0.33 -0.06 -0.54 -0.67 -1.03 -0.61 -1.19 0.6 0.38 0.08
-0.85 -4.28 -3.86 -1.46 -1.72 -0.87 -0.83 -1.46 -0.65 0.64 0.96 0.62 -1.97 0.42 -0.17 3.47 -1.19 -2.45 - -2.53 -1.08 -4.12 -0.61 -0.92 -1.43 0.12
- - - - - 0.74 - -0.32 - - - -0.25 - 1.34 -0.59 2.96 0.86 0.12 - 2.35 - - - - 1.89 -
-1.17 -2.44 -3.61 -2.59 -1.54 - -3.16 -1.25 -1.9 -0.34 0.43 -0.19 -1.16 0.6 -0.58 3.75 0.41 - -1.34 -2.96 -1.1 -3.86 -0.47 -0.26 -1.67 -0.6
- - - -1.37 -0.4 -1.44 -1.45 -0.5 0.88 1.04 1.69 -1.36 -1.56 -0.81 -0.7 3.16 -0.24 - - - 0.35 -1.71 0.1 - -0.52 0.34
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- -6.14 -8.04 - - - - - - - - - - -6.7 -4.72 4.69 -5.37 - -7.05 -5.07 - - - - - -
- -2.95 - - - - - - -3.1 - - -3.0 - -1.35 - 4.62 -3.12 -2.65 - -1.68 -3.08 - - - - -
- - - - 2.18 - - - - - - - - - - 4.42 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
-0.46 0.06 0.1 0.27 -0.05 -1.22 -0.76 1.37 1.33 -0.89 -0.83 -1.26 -0.96 0.69 -1.45 1.99 0.44 -1.95 1.06 0.81 -0.76 -1.12 - - -1.43 -
- - - 0.25 -0.81 2.2 1.89 1.41 -0.66 -0.79 -0.78 - - -0.36 - 2.73 - -1.25 -1.06 -1.09 1.19 - - - -1.32 -
- - - - - - 1.62 2.44 - - 1.35 - - 0.83 - 3.72 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.02 - - - 1.91 2.6 - - - - -
- - - - - - - - - - - - - 3.29 - 4.02 - - - - - - - - - -
- - - -0.25 1.28 - - - - 2.71 - - - - -0.46 2.95 0.03 - 1.03 1.0 - - - - 1.44 -
1.56 - - 1.65 - - 1.58 - 1.7 - - - 1.47 - - 3.14 - - - - - - - - - 1.07
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -
- - - - - - - 0.07 - 2.06 - - - 1.69 1.93 3.36 - - - -0.52 - 0.46 - 0.46 - -
- - - - - - 3.13 - - - - - - - - 4.11 - - - - - - - - - -
-1.28 - -0.74 -1.02 0.08 0.04 0.23 1.07 0.09 -0.04 - 0.12 - - -0.14 2.79 -1.0 1.55 1.2 -0.2 -1.91 - - - -0.0 -1.55
- - - - - - - - - - - - - - - 4.7 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.