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  5. Cba_g45912

Cba_g45912 (OTP86)


Aliases : OTP86

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g45912

Target Alias Description ECC score Gene Family Method Actions
Aev_g07716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17904 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07157 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29942 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16793 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g30334 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Msp_g03944 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g04292 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04704 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005807 No alias not classified & original description: CDS=1-2844 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021978 No alias not classified & original description: CDS=1-2700 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022629 No alias not classified & original description: CDS=614-2965 0.02 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo113567 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Tin_g03506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 192 241
No external refs found!