Cba_g42791 (HTA6)

Aliases : HTA6

Description : histone *(H2A) & original description: none

Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g42791

Target	Alias	Description	ECC score	Gene Family Method
AT1G08880	GAMMA-H2AX,...	Histone superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g112169	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Cre06.g266700	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g268050	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g268300	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g271350	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g273900	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g274200	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g274800	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g275850	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g276500	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre06.g276950	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre12.g504750	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre12.g505550	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre12.g506250	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre17.g708550	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre17.g709200	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre17.g711700	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Cre17.g713400	HTA10	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
Solyc06g084430.4.1	GAMMA-H2AX,...	histone (H2A)	0.02	OrthoFinder output from all 47 species
Solyc09g074300.1.1	GAMMA-H2AX,...	histone (H2A)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005861	troponin complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	64	97
IPR007125	Histone_H2A/H2B/H3	2	61

External Links

No external refs found!

Cba_g42791 (HTA6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation